Data from: When viruses don’t go viral: the importance of host phylogeographic structure in the spatial spread of arenaviruses

Gryseels S, Baird S, Makundi R, Borremans B, Leirs H, Gouy de Bellocq J

Date Published: January 25, 2017

DOI: http://dx.doi.org/10.5061/dryad.5n00k

 

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Title FieldLabData_GryseelsPLoSPathogens2016
Description Field information, arenavirus screening data and GenBank accession numbers of Mastomys natalensis as described in the manuscript "When viruses don't go viral: the importance of host phylogeographic structure in the spatial spread of arenaviruses".
Download README.txt (2.758 Kb)
Download FieldLabData_GryseelsPLoSPathogens2016.xlsx (224.6 Kb)
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Title Microsatellite genotypes_GryseelsPLoSPathogens2016
Description Genotypes of 15 microsatellite loci of 760 Mastomys natalensis individuals from Tanzania.
Download Microsatellite genotypes_GryseelsPLoSPatho....xlsx (159.1 Kb)
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Title Landscape cost values for GIS and Circuitscape analyses_GryseelsPLoSPathogens2016
Description Cost values of land use elements that occurred in our study area in terms of Mastomys natalensis habitat quality.
Download Landscape cost values for GIS and Circuit...16.xls (149.5 Kb)
Download README.txt (1.215 Kb)
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Title STRUCTURE parameter settings
Description Parameter settings used in the software STRUCTURE, to infer population genetic structure of Mastomys natalensis based on microsatellite genotypes.
Download STRUCTURE parameter settings.txt (1.32 Kb)
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Title MrBayes input files
Description Input files for the software MrBayes of arenavirus partial L, NP and GPC sequences, containing the used alignments and parameter settings to infer the phylogenetic trees displayed in the manuscript.
Download MrBayes input files.zip (91.54 Kb)
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When using this data, please cite the original publication:

Gryseels S, Baird S, Makundi R, Borremans B, Leirs H, Gouy de Bellocq J (2017) When viruses don’t go viral: the importance of host phylogeographic structure in the spatial spread of arenaviruses. PLOS Pathogens 13(1): e1006073. http://dx.doi.org/10.1371/journal.ppat.1006073

Additionally, please cite the Dryad data package:

Gryseels S, Baird S, Makundi R, Borremans B, Leirs H, Gouy de Bellocq J (2017) Data from: When viruses don’t go viral: the importance of host phylogeographic structure in the spatial spread of arenaviruses. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5n00k
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