Data from: Evolutionary origin of the Scombridae (tunas and mackerels): members of a Paleogene adaptive radiation with 14 other pelagic fish families

Miya M, Friedman M, Satoh TP, Takeshima H, Sado T, Iwasaki W, Yamanoue Y, Nakatani M, Mabuchi K, Inoue JG, Poulsen JY, Fukunaga T, Sato Y, Nishida M

Date Published: September 6, 2013

DOI: http://dx.doi.org/10.5061/dryad.5ns57

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title 1n2n3acRnTn data set
Downloaded 37 times
Description 3rd codon positions AC converted. See README.txt for partition setting following RAxML format.
Download 07_ocean124ac3.phy (1.679 Mb)
Download README.txt (119 bytes)
Details View File Details
Title 1n2n3nRnTn data set
Downloaded 36 times
Description All codon positions included. See README.txt for partition setting following RAxML format.
Download 05_ocean124all.phy (1.679 Mb)
Download README.txt (119 bytes)
Details View File Details
Title 1n2nRnTn data set
Downloaded 20 times
Description 3rd codon positions excluded. See README.txt for partition setting following RAxML format.
Download 09_ocean124no3.phy (1.247 Mb)
Download README.txt (119 bytes)
Details View File Details
Title aaRnTn data set
Downloaded 22 times
Description Protein-coding genes are converted into amino acid sequences. See README.txt for partition setting following RAxML format.
Download 12_ocean124aart.nex (816.6 Kb)
Download README.txt (71 bytes)
Details View File Details
Title ATP6 data set used in bioinformatic analysis
Downloaded 10 times
Description 391 species included.
Download ocean391_AT6.phy (269.0 Kb)
Details View File Details
Title CO1 data set used in bioinformatic analysis
Downloaded 10 times
Description 3163 species included
Download ocean3163_CO1.phy (4.927 Mb)
Details View File Details
Title CYB data set used in bioinformatic analysis
Downloaded 10 times
Description 3045 species included
Download ocean3045_CYB.phy (3.474 Mb)
Details View File Details
Title ND1 data set used in bioinformatic analysis
Downloaded 12 times
Description 363 species included
Download ocean363_ND1.phy (365.1 Kb)
Details View File Details
Title ND2 data set used in bioinformatic analysis
Downloaded 14 times
Description 1309 species included
Download ocean1309_ND2.phy (1.434 Mb)
Details View File Details
Title ND4 data set used in bioinformatic analysis
Downloaded 5 times
Description 237 species included
Download ocean237_ND4.phy (334.6 Kb)
Details View File Details
Title rag1 data set used in bioinformatic analysis
Downloaded 10 times
Description 1078 species included
Download ocean1078_rag1.phy (1.666 Mb)
Details View File Details
Title rag2 data set used in bioinformatic analysis
Downloaded 7 times
Description 642 species included
Download ocean642_rag2.phy (787.7 Kb)
Details View File Details
Title rhod data set used in bioinformatic analysis
Downloaded 8 times
Description 792 species included
Download ocean792_rhod.phy (845.0 Kb)
Details View File Details

When using this data, please cite the original publication:

Miya M, Friedman M, Satoh TP, Takeshima H, Sado T, Iwasaki W, Yamanoue Y, Nakatani M, Mabuchi K, Inoue JG, Poulsen JY, Fukunaga T, Sato Y, Nishida M (2013) Evolutionary origin of the Scombridae (tunas and mackerels): members of a Paleogene adaptive radiation with 14 other pelagic fish families. PLoS ONE 8(9): e73535. http://dx.doi.org/10.1371/journal.pone.0073535

Additionally, please cite the Dryad data package:

Miya M, Friedman M, Satoh TP, Takeshima H, Sado T, Iwasaki W, Yamanoue Y, Nakatani M, Mabuchi K, Inoue JG, Poulsen JY, Fukunaga T, Sato Y, Nishida M (2013) Data from: Evolutionary origin of the Scombridae (tunas and mackerels): members of a Paleogene adaptive radiation with 14 other pelagic fish families. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5ns57
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: