Data from: A metagenetic approach for revealing community structure of marine planktonic copepods

Hirai J, Kuriyama M, Ichikawa T, Hidaka K, Tsuda A

Date Published: June 17, 2014

DOI: http://dx.doi.org/10.5061/dryad.5p1j3

 

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Title Sequence file for classification
Downloaded 6 times
Description Sequence file for the naϊve Bayesian classifier implemented in mothur
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Title Taxonomy file for classification
Downloaded 41 times
Description Taxonomy file for the naϊve Bayesian classifier implemented in mothur
Download Taxonomy file for classification.xlsx (17.96 Kb)
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Title Aligned LSU sequences of copepods
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Description Aligned sequences of LSU D2 region registered in this study (GenBank accessions AB796399–AB796431 and AB820728–AB820803)
Download JH_copepod_LSU_aligned.fas (56.16 Kb)
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Title MOTU table for artificial community sample
Downloaded 30 times
Description MOTU list for artificial community sample (33 morphologically identified species) at the 97% threshold, with information of number of sequence reads, Blast result and representative sequence.
Download 33sp_MOTU_list.xlsx (18.35 Kb)
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Title MOTU table for field-collected samples
Downloaded 33 times
Description MOTU list for field-collected samples at the 97% similarity threshold, with information of number of sequence reads in each station, Blast result, and representative sequences. The taxonomic order determined by the naϊve Bayesian classifier implemented in mothur is also listed.
Download Field_MOTU_list.xlsx (27.52 Kb)
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Title Raw data of morphological analysis
Downloaded 31 times
Description Morphological analysis of field-collected samples. Numbers of individuals (Inds.) and total dry weight (DW) for all species identified from each sampling location. Numbers of individuals and DW are calibrated into unsplit (1/1) samples.
Download Morphological_data.xlsx (18.34 Kb)
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Title MOTU table for field-collected samples (99% similarity)
Downloaded 32 times
Description MOTU list for field-collected samples at the 99% similarity threshold, with information of number of sequence reads in each station, and representative sequences.
Download 99% sequence reads.xlsx (32.43 Kb)
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Title MID tag information
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Description MID tag used in this study. Each sample was differentiated by unique multiplex identifier (MID) adaptors in GS Titanium Rapid Library MID Adaptors Kit (Roche).
Download MID_tag_information.xlsx (8.799 Kb)
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When using this data, please cite the original publication:

Hirai J, Kuriyama M, Ichikawa T, Hidaka K, Tsuda A (2015) A metagenetic approach for revealing community structure of marine planktonic copepods. Molecular Ecology Resources 15(1): 68-80. http://dx.doi.org/10.1111/1755-0998.12294

Additionally, please cite the Dryad data package:

Hirai J, Kuriyama M, Ichikawa T, Hidaka K, Tsuda A (2014) Data from: A metagenetic approach for revealing community structure of marine planktonic copepods. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5p1j3
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