Data from: Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes

Rougemont Q, Gagnaire P, Perrier C, Genthon C, Besnard A, Launey S, Evanno G

Date Published: April 21, 2016

DOI: http://dx.doi.org/10.5061/dryad.5p5c0

 

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Title DatasetRougemontRAD.tar
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Description Contains the main file from Rougemont et al. study . 9 pairwise vcf used to compute diversity analysis, Fst, perform genome scan, etc..1 main genepop file containing data from the 9 populations pairs (8962 SNPs) 1 files containing the 40 more relevant SNPs used for hybrid identification Folded and Unfolded JSFS for diffusion approximation. Note: information on dadi are available at: https://github.com/QuentinRougemont/DemographicInference
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When using this data, please cite the original publication:

Rougemont Q, Gagnaire P, Perrier C, Genthon C, Besnard A, Launey S, Evanno G (2017) Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes. Molecular Ecology 26(1): 142-162. http://dx.doi.org/10.1111/mec.13664

Additionally, please cite the Dryad data package:

Rougemont Q, Gagnaire P, Perrier C, Genthon C, Besnard A, Launey S, Evanno G (2016) Data from: Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5p5c0
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