Data from: Genomic evidence for role of inversion 3RP of Drosophila melanogaster in facilitating climate change adaptation

Rane RV, Rako L, Lee SF, Hoffmann AA, Kapun M

Date Published: March 23, 2015

DOI: http://dx.doi.org/10.5061/dryad.5q0m8

 

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Title Scripts and manual for bioinformatic analyses
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Download RVR_pipeline.sh (13.27 Kb)
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Title Chr 3L -> Population - Is [Alignment Files]
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Download 3LIs_crams.tar.bz2 (956.2 Mb)
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Title Chr 3L -> Population - Ys [Alignment Files]
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Download 3LYs_crams.tar.bz2 (1.009 Gb)
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Title Chr 3L -> Population - Ii [Alignment Files]
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Download 3LIi_crams.tar.bz2 (1.198 Gb)
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Title Chr 3R -> Population - Is [Alignment Files]
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Download 3RIs_crams.tar.bz2 (1.101 Gb)
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Title Chr 3R -> Population - Ys [Alignment Files]
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Download 3RYs_crams.tar.bz2 (1.157 Gb)
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Title Chr 3R -> Population - Ii [Alignment Files]
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Download 3RIi_crams.tar.bz2 (1.369 Gb)
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Title Imputed and combined variant call files
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Description VCF files for 3 populations after data imputation
Download 3L-3R_Imputed_Merged_Variant_calls.tar.gz (3.969 Mb)
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Title Raw variant calls from alignment files
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Description VCF files created using GATK UnifiedGenotyper from alignment files
Download 3L-3R_Raw_variant_calls.tar.gz (85.53 Mb)
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Title Fst calculations
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Description FST calculations for all comparisons per SNP and in 200kb windows sliding every 20kb, using VCFTOOLS
Download Fst_calculations_VCFTOOLS.tar.gz (667.9 Kb)
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When using this data, please cite the original publication:

Rane RV, Rako L, Lee SF, Hoffmann AA, Kapun M (2015) Genomic evidence for role of inversion 3RP of Drosophila melanogaster in facilitating climate change adaptation. Molecular Ecology 24(10): 2423-2432. http://dx.doi.org/10.1111/mec.13161

Additionally, please cite the Dryad data package:

Rane RV, Rako L, Lee SF, Hoffmann AA, Kapun M (2015) Data from: Genomic evidence for role of inversion 3RP of Drosophila melanogaster in facilitating climate change adaptation. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5q0m8
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