Data from: Seascape genomics provides evidence for thermal adaptation and current-mediated population structure in American lobster (Homarus americanus)

Benestan LM, Quinn BK, Maaroufi H, Laporte M, Clark FK, Greenwood SJ, Rochette R, Bernatchez L

Date Published: September 8, 2016

DOI: http://dx.doi.org/10.5061/dryad.5vb8v.2

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title 13688snps-562individus.recode
Description The file contains 13,688 SNPs and 562 individuals.
Download 13688snps-562individus.recode.vcf (112.1 Mb)
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Title RDA-selection
Description The script used for performing RDA on the putatively under selection SNPs.
Download scrip-rda-selection-legendre.R (8.135 Kb)
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Title RDA-neutral
Description The script used for performing RDA on the putatively neutral SNPs.
Download scrip-rda-neutral.R (12.87 Kb)
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Title 9770snps-neutral.frq
Downloaded 1 time
Description The file containing all the allele frequencies for the putatively neutral SNPs.
Download 9770snps-neutral.frq.strat (5.643 Mb)
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Title 28snps-562ind-freq.frq
Downloaded 1 time
Description The file containing all the allele frequencies for the putatively neutral SNPs.
Download 28snps-562ind-freq.frq.strat (15.87 Kb)
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Title script-outflank
Downloaded 1 time
Description The script used for running OUTFLANK
Download script-outflank.R (1.994 Kb)
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Title bayescan-13688snps-562ind 2
Description The file used to run Bayescan.
Download bayescan-13688snps-562ind 2.geste (4.566 Mb)
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Title script_bayescan_laura
Downloaded 3 times
Description The script used to analyse bayescan results.
Download script_bayescan_laura.r (3.708 Kb)
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Title arlequin-13688snps-562ind
Description The file use dot run Arlequin.
Download arlequin-13688snps-562ind.arp (30.78 Mb)
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Title AEM_vectors
Description The output of the AEM analysis.
Download AEM_vectors.txt (5.867 Kb)
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Title aem-19pop
Description The input to calculate AEM vectors
Download aem-19pop.txt (1.063 Kb)
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Title Geographical_data
Description The spatial distribution data file used to calculate dbMEM
Download Geographical_data.txt (452 bytes)
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Title Environmental
Description The sea surface temperature data.
Download Environmental.txt (872 bytes)
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Title script-AEM
Downloaded 1 time
Description The file used to visualize AEM vectors.
Download script-AEM.R (2.493 Kb)
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Title freq-allelic-13688snps.txt.frq
Downloaded 3 times
Description All the allele frequencies at each SNP used to perform correlation tests.
Download freq-allelic-13688snps.txt.frq.txt (7.391 Mb)
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Title 8094loci
Description All the sequence used to perform a BLAST search.
Download 8094loci.fasta (790.1 Kb)
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When using this data, please cite the original publication:

Benestan L, Quinn BK, Maaroufi H, Laporte M, Clark FK, Greenwood SJ, Rochette R, Bernatchez L (2016) Seascape genomics provides evidence for thermal adaptation and current-mediated population structure in American lobster (Homarus americanus). Molecular Ecology 25(20): 5073-5092. http://dx.doi.org/10.1111/mec.13811

Additionally, please cite the Dryad data package:

Benestan LM, Quinn BK, Maaroufi H, Laporte M, Clark FK, Greenwood SJ, Rochette R, Bernatchez L (2016) Data from: Seascape genomics provides evidence for thermal adaptation and current-mediated population structure in American lobster (Homarus americanus). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5vb8v.2
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