Data from: Accurate estimation of substitution rates with neighbour-dependent models in a phylogenetic context

Bérard J, Guéguen L

Date Published: January 27, 2012

DOI: http://dx.doi.org/10.5061/dryad.5vp21b10

 

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Title appendix
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Title ENm001
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Description Sequence of the ENm001 region of the ENCODE Pilot Project (position 115,810,521 to position 117,687,946 on chromosome 7) from the hg19 version of the human genome, together with aligned sequences from nine other primate species (Chimpanzee, Gorilla, Orang-utan, Macaque, Baboon, Marmoset, Tarsier, Gray mouse lemur, Galago) as available from the Galaxy web tool (http://galaxy.psu.edu/).
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Title ENm001_AR
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Description Portion of ENm001 made from "Ancestral" repeated elements, according to the RepeatMasker annotations on the human sequence from the UCSC Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables) Pieces of the alignment corresponding to simple repeats, low complexity regions, members of the Alu family, and RNA elements that diverged less than 25% and L1 elements that diverged less than 20% from the reference RepBase sequence, were removed.
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When using this data, please cite the original publication:

Bérard J, Guéguen L (2012) Accurate estimation of substitution rates with neighbour-dependent models in a phylogenetic context. Systematic Biology 61(3): 510-521. http://dx.doi.org/10.1093/sysbio/sys024

Additionally, please cite the Dryad data package:

Bérard J, Guéguen L (2012) Data from: Accurate estimation of substitution rates with neighbour-dependent models in a phylogenetic context. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5vp21b10
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