Data from: Sequence capture versus restriction site associated DNA sequencing for shallow systematics

Harvey MG, Smith BT, Glenn TC, Faircloth BC, Brumfield RT

Date Published: May 9, 2016

DOI: http://dx.doi.org/10.5061/dryad.604b8.2

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title UCE and Exon Alignments from 40 Neotropical Birds
Downloaded 6 times
Description Alignments of 2,416 loci from 40 species of Neotropical birds. For each species at each alignment, a single sample was selected from a population-level dataset.
Download one_align_for_overlap_count.zip (8.136 Mb)
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Title Supplemental Methods, Figures, and Tables
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Description Additional information on methods and results of analyses of sequence capture and RAD-Seq datasets from Xenops minutus.
Download Supplemental_Information.docx (2.435 Mb)
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Title Raw reads from sequence capture with 8 *Xenops minutus* samples
Downloaded 9 times
Description Illumina reads from sequence capture of 1,358 ultraconserved element (UCE) loci in 4 *X. minutus* samples from either side of the Andes. Tissue numbers corresponding to those used in the Table S1 and barcodes are provided in the filename for each sample.
Download Xenops_SeqCap_reads.zip (8.970 Gb)
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Title Raw reads from RAD-Seq with 8 *Xenops minutus* samples
Downloaded 4 times
Description Illumina reads from genotyping by sequencing (a RAD-Seq method) using the enzyme PstI in 4 *X. minutus* samples from either side of the Andes. Tissue numbers corresponding to those used in the Table S1 and barcodes are provided in the filename for each sample.
Download Xenops_RADseq_reads.zip (1.566 Gb)
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When using this data, please cite the original publication:

Harvey MG, Smith BT, Glenn TC, Faircloth BC, Brumfield RT (2016) Sequence capture versus restriction site associated DNA sequencing for shallow systematics. Systematic Biology 65(5): 910-924. http://dx.doi.org/10.1093/sysbio/syw036

Additionally, please cite the Dryad data package:

Harvey MG, Smith BT, Glenn TC, Faircloth BC, Brumfield RT (2016) Data from: Sequence capture versus restriction site associated DNA sequencing for shallow systematics. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.604b8.2
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