Data from: The evolutionary origins of hierarchy

Mengistu H, Huizinga J, Mouret J, Clune J

Date Published: April 21, 2016

DOI: http://dx.doi.org/10.5061/dryad.60hp6

 

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Title Adaptability Experiment Data
Downloaded 8 times
Description Network information from the four adaptability experiments. There are a separate sub-folders for each of the adaptability experiment. A sub-folder has all networks evolved in the new environment, and for each network there is the individual.log file that contains the performance, modularity, hierarchy, and connection cost values.
Download Adaptability_Experiment_Data.zip (265.4 Mb)
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Title AND-EQU-AND Experiment Data
Downloaded 3 times
Description All the PA and P&CC networks from the AND-EQU-AND experiment are included. For both treatments, the data package contains network descritptions (in XML format) at generations 0 and 2500. Futhermore, for each network, the individual.log file provides the performance, modularity, hierarchy, and connection cost values of that networks. The solvent.txt file indicate the percentage of sub-problems that the network solves.
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Title Main Experiment Data
Downloaded 4 times
Description The main experimental data contains all evovled networks from PA and P&CC treatments. Network description at the 0th and 2500th generations are provided in XML format. For both final PA and P&CC networks, the individual.log file contains the performance, modularity, hierarchy, and connection cost values, and solvent.txt file has the value for the percentage of sub-problem solved.
Download AndXorAnd_Main_Experiment_Data.zip (23.59 Mb)
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Title Long Range Connection Experiment Data
Downloaded 4 times
Description All the PA and the P&CC networks from the experiment that allows connections to skip layers are included. In XML format, we provide network descritptions at the 0th and 2500th generations.
Download Long_Range_Connections_Experiment_Data.zip (8.595 Mb)
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Title Map-elites Exeriment Data
Downloaded 2 times
Description This data package contains a data file containing the performance, modularity, hierarchy of networks evolved via the map-elites algorithm. The data was dipicted in Fig.7 in the main manuscript.
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Title Non-Modular Experiment Data
Downloaded 2 times
Description The modular but, hierarchical networks from the Non-Modular experiment are included, in this data package. For each network, there are the 0th and 2500th generation XML files containing the are serialized version of the network. Network's performance, modularity, hierarchy, and connection cost are given in the individual.log file, and the percentage of sub-problems the network solves is in solvent.txt file.
Download Non_Modular_But_Hierarchal_Experiment_Data.zip (3.193 Mb)
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Title OR-XOR-EQU Experiment Data
Downloaded 1 time
Description This data package contains PA and P&CC networks from the OR-XOR-EQU experiment. The two XML files contain the serialization of each network at the 0th and 2500th generations. In the individual.log file, the performance, modularity, hierarchy, and connection cost of a network are provided. The percentage of sub-problems that a network solves is in solvent.txt file.
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Title Three_Outputs_Problem_Experiment_Data
Downloaded 1 time
Description Network data from the experiment that evovled networks to solve the three-output problem. These data contain XML serialized PA and P&CC networks at the 0th and 2500th generations.
Download Three_Outputs_Problem_Experiment_Data.zip (7.118 Mb)
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Title Two-Output Experiment Data
Downloaded 1 time
Description Network data from the experiment that involved three outputs problem. These data contain XML serialized PA and P&CC networks at the 0th and 2500th generations.
Download Two_Outputs_Problem_Experiment_Data.zip (6.599 Mb)
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Title Python Plotting Scripts
Downloaded 3 times
Description Python written plotting scripts, which are used to generate the figures in the paper.
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Title https://github.com/henokyen/EOH
Description The source code that we used to do our experiments can be found at: https://github.com/henokyen/EOH
Download //github.com/henokyen/EOH (0 bytes)
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When using this data, please cite the original publication:

Mengistu H, Huizinga J, Mouret J, Clune J (2016) The evolutionary origins of hierarchy. PLOS Computational Biology 12(6): e1004829. http://dx.doi.org/10.1371/journal.pcbi.1004829

Additionally, please cite the Dryad data package:

Mengistu H, Huizinga J, Mouret J, Clune J (2016) Data from: The evolutionary origins of hierarchy. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.60hp6
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