Data from: Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles

 

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Title Description of Bioinformatic Analysis Pipeline
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Description Text file containing general remarks and description of the most important tools used in the analysis pipeline
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Title scripts
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Description Zipped folder, which contains the most important python scripts used in the analysis pipeline
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Title BF15.vcf
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Description Total set of SNPs identified in the populations used for the comparison of base and generation 15 provided in the *.vcf file format
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Title BF37.vcf
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Description Total set of SNPs identified in the populations used for the comparison of base and generation 37 provided in *.vcf file format
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Title BF15.sync
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Description Synchronized pileup file created with PoPoolation2 containing the allelic information of all populations used in the analysis of the comparison between Base and generation 15. P-Values of the Cochran Mantel Haenzel Test are attached to each SNP in the last column. The order of the population is as follows: BR1,BR3,BR2,F15R4,F15R5,F23R1,F27R5,F37R4,F37R5,F37R1
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Title BF37.sync
Downloaded 109 times
Description Synchronized pileup file created with PoPoolation2 containing the allelic information of all populations used in the analysis of the comparison between Base and generation 37. P-Values of the Cochran Mantel Haenzel Test are attached to each SNP in the last column. The order of the population is as follows: BR1,BR3,BR2,F15R4,F15R5,F23R1,F27R5,F37R4,F37R5,F37R1
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When using this data, please cite the original publication:

Orozco-terWengel P, Kapun M, Nolte V, Kofler R, Flatt T, Schlötterer C (2012) Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles. Molecular Ecology 21(20): 4931-4941. http://dx.doi.org/10.1111/j.1365-294X.2012.05673.x

Additionally, please cite the Dryad data package:

Orozco-terWengel P, Kapun M, Nolte V, Kofler R, Flatt T, Schlötterer C (2012) Data from: Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.60k68
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