Data from: Genomic and phenotypic differentiation of Arabidopsis thaliana along altitudinal gradients in the North Italian Alps

Günther T, Lampei C, Barilar I, Schmid KJ

Date Published: May 24, 2016

DOI: http://dx.doi.org/10.5061/dryad.61d1m

 

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Title 2k_table
Downloaded 8 times
Description Table with per 2kb window Tajima D and pi for each of the populations
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Title Pub1_parameter_means
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Description Calculating chromosome means for the poopolation output of the Tajima's D, nucleotide diversity and Wattersons theta values of the five populations.
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Title Pub2_correlations
Downloaded 4 times
Description Spearman and Pearsons correlations of the all five populations
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Title Pub3_arabidopsis_table
Downloaded 7 times
Description Making the 2k table from PoPoolation output.
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Title Pub4_preliminary_parameter_plots
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Description Preliminary plotting of D, pi, theta across chromosomes for all populations.
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Title Pub5_final_parameter_plots
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Description Final set of Tajima D and pi plots for the publication.
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Title Pub6_populations_map
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Description Publication populations map. Making the Italy part of the map.
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Title Pub7_ABC_analysis
Downloaded 8 times
Description This presents the code to do the ABC analysis of the msABC output files.
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Title Pub8_treemix_fourpop
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Description Treemix input file generator.
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Title treemix_input_30_4
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Description Treemix input file.
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Title phenotypic_data_analysis
Downloaded 4 times
Description This folder contains an R-script with the complete data analysis for the phenotypic traints analized in this paper. Besides the folder contains all phenotpic data and the data logger data from the frost test experiment.
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Title temp_logger_high_altitude
Downloaded 5 times
Description Temperature logger data from the two high altitude sites. These data were used to produce fig. S9.
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When using this data, please cite the original publication:

Günther T, Lampei C, Barilar I, Schmid K (2016) Genomic and phenotypic differentiation of Arabidopsis thaliana along altitudinal gradients in the North Italian Alps. Molecular Ecology 25(15): 3574–3592. http://dx.doi.org/10.1111/mec.13705

Additionally, please cite the Dryad data package:

Günther T, Lampei C, Barilar I, Schmid KJ (2016) Data from: Genomic and phenotypic differentiation of Arabidopsis thaliana along altitudinal gradients in the North Italian Alps. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.61d1m
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