Data from: QTL analysis of behavior in nine-spined sticklebacks (Pungitius pungitius)

Laine VN, Herczeg G, Shikano T, Vilkki J, Merilä J

Date Published: November 5, 2013

DOI: http://dx.doi.org/10.5061/dryad.62380

 

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Title Genotype input file for GridQTL
Downloaded 37 times
Description Genotypes of 226 microsatellite markers used in GridQTL analyses. Line 1: Number of markers Line 2: List of names of the markers Line 3: Names given to each of the generations. Line 4: Names given to males and females. Line 5: Symbol or symbols for missing genotype data. Line 6 on Data for each individual in turn. Contains in order: Individual ID Sire ID Dam ID Sex Line or generation Marker genotypes
Download GENOTYPES.txt (511.6 Kb)
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Title Map input file for GridQTL
Downloaded 19 times
Description The linkage map, obtained from Crimap, of nine-spined stickleback for GridQTL analyses. Line 1: Number of chromosomes Line 2: Interval for calculation of genotype probabilities and coefficients in cM. Line 3: Name of first chromosome, number of markers on first chromosome and whether map is same for two sexes (=1) or not (=2). Line 4: For first linkage group, marker names in order separated by distances between them in cM.
Download MAP.txt (4.311 Kb)
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Title Phenotype (behavior) input file for GridQTL
Downloaded 35 times
Description Behavior measurements in nine-spined sticklebacks for QTL mapping analyses in GridQTL. Line 1: Numbers of fixed effects (factors), covariates and traits, respectively Line 2: Name of each fixed effect, covariate and trait. Line 3: Code for missing trait value Line 4 : Individual ID and values for fixed effects, covariates and traits for that individual. Sex: 0 female, 1 male. Feedbi, riskbi, expbi: 0 moving fish, 1 non-moving fish
Download PHENOTYPES_behavior.txt (11.16 Kb)
Download PHENOTYPES_behavior.txt (11.16 Kb)
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When using this data, please cite the original publication:

Laine VN, Herczeg G, Shikano T, Vilkki J, Merilä J (2013) QTL analysis of behavior in nine-spined sticklebacks (Pungitius pungitius). Behavior Genetics 44(1): 77-88. http://dx.doi.org/10.1007/s10519-013-9624-8

Additionally, please cite the Dryad data package:

Laine VN, Herczeg G, Shikano T, Vilkki J, Merilä J (2013) Data from: QTL analysis of behavior in nine-spined sticklebacks (Pungitius pungitius). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.62380
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