Data from: Symbioses with nitrogen-fixing bacteria: nodulation and phylogenetic data across legume genera

Afkhami ME, Mahler DL, Burns JH, Weber MG, Wojciechowski MF, Sprent J, Strauss SY

Date Published: December 11, 2017

DOI: https://doi.org/10.5061/dryad.625tn

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Title DataS1 - Nodulation and phylogenetic data for legume genera.
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Description DataS1.zip includes the following files: [1] File name: Nodulation_clade.csv; Size: 749 rows excluding header; Format and storage mode: comma-separated values format, no compression; Header Information: See Header_explanation.csv; Description: Analysis-ready, searchable database of nodulation data for 749 legume genera with species diversity, subfamily associations, and phylogenetic information corresponding to family-wide trees (curated and pruned from LPWG 2013; available in pruned_tree.zip). [2] File name: Header_explanation.csv; Size: 6 rows excluding header; Format and storage mode: comma-separated values format, no compression; Header Information: NA; Description: Table providing description of each column contents of Nodulation_clade.csv. [3] File name: pruned_tree.zip (pruned.legume.1.date.tre - pruned.legume.100.date.tre); Size: 100 phylogenetic trees; Format and storage mode: zip (.tre format within zip folder); Header Information: NA; Description: The set of 100 sampled trees from the LPWG (2013) pruned down to 157 shared or “consensus” clades to achieve a distribution of backbone phylogenies representing the deep phylogenetic structure of the legumes. Our curation and pruning allows for compatibility of phylogenetic information with available nodulation data (available in Nodulation_clade.csv database). [4] Table S1.pdf; Size: 1 pg; Format and storage mode: pdf, no compression; Header Information: Provided in file; Description: Phylogenetic ANOVA result – difference in net diversification rates between nodulating and non-nodulating legume clades with ‘unknown’ data included as either all “nodulating’ or all ‘non-nodulating’.
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When using this data, please cite the original publication:

Afkhami ME, Mahler DL, Burns JH, Weber MG, Wojciechowski MF, Sprent J, Strauss SY (2017) Symbioses with nitrogen-fixing bacteria: nodulation and phylogenetic data across legume genera. Ecology, online in advance of print. https://doi.org/10.1002/ecy.2110

Additionally, please cite the Dryad data package:

Afkhami ME, Mahler DL, Burns JH, Weber MG, Wojciechowski MF, Sprent J, Strauss SY (2017) Data from: Symbioses with nitrogen-fixing bacteria: nodulation and phylogenetic data across legume genera. Dryad Digital Repository. https://doi.org/10.5061/dryad.625tn
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