Data from: Genetic basis of adult migration timing in anadromous steelhead discovered through multivariate association testing

Hess JE, Zendt JS, Matala AR, Narum SR

Date Published: April 15, 2016

DOI: http://dx.doi.org/10.5061/dryad.62q6n

 

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Title TASSLEgeno15239Ind237vfinal_genotype.hmp
Downloaded 11 times
Description The input file of genotypes for the program TASSLE which was used to perform the univariate GWAS for this study.
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Title TASSLE_input15239Ind237vfinal_covtraits
Downloaded 7 times
Description This file contains the population structure individual Q values that were used as trait covariates in the program TASSLE to perform a univariate GWAS. Included are the individual proportions of ancestry using a K=6 and a K=10. For the analyses reported in the study, we used K=10, but we mentioned examining results with K=6 in the supplemental methods.
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Title TASSLE_input15239Ind237vfinal_traits
Downloaded 4 times
Description This file contains additional traits and covariates that were used to perform a univariate GWAS in TASSLE. Covariates include collection "year", and gender (1=male, 2=female). The trait phenotype is listed as "Dayreorder" which represents migration-timing in units of ordinal day as the phenotype. We "re-ordered" these days to reflect the biological sequence of annual steelhead migrations. Refer to the methods in the study for more detail.
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When using this data, please cite the original publication:

Hess JE, Zendt JS, Matala AR, Narum SR (2016) Genetic basis of adult migration timing in anadromous steelhead discovered through multivariate association testing. Proceedings of the Royal Society B 283(1830): 20153064. http://dx.doi.org/10.1098/rspb.2015.3064

Additionally, please cite the Dryad data package:

Hess JE, Zendt JS, Matala AR, Narum SR (2016) Data from: Genetic basis of adult migration timing in anadromous steelhead discovered through multivariate association testing. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.62q6n
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