Data from: Speciation genomics and a role for the Z chromosome in the early stages of divergence between Mexican ducks and mallards

Lavretsky P, DaCosta JM, Hernández-Baños BE, Engilis Jr A, Sorenson MD, Peters JL

Date Published: September 28, 2015

DOI: http://dx.doi.org/10.5061/dryad.6361n

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title BAYESCAN.FILES
Downloaded 4 times
Description Input structure-like and BayeScan files for analyzing 3,523 autosomal and 172 Z-linked markers between Mexican ducks and mallards, as well as within Mexican ducks.
Download BAYESCAN.FILES.zip (2.202 Mb)
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Title FASTA & NEXUS.FILES
Downloaded 1 time
Description Final genotypes for 17 mallards and 105 Mexican ducks in fasta format. For fasta files, we provide individual files per locus across 3,523 autosomal and 172 Z-linked markers, as well as, concatenated files across all markers, autosomal-only, and Z-linked only. Additionally, concatenated files for autosomal and Z-linked are provided in nexus format
Download FASTA.NEXUS.FILES.zip (14.37 Mb)
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Title MALLvMEDU.IM
Downloaded 1 time
Description Run-ready IM input file with 1 mitochondrial and 17 nuclear introns (geometric mean of locus length = 215.8 bp) sequenced across 25 mallards and 25 Mexican ducks (attained from Lavretsky et al. 2014, The Auk. 131:524–538).
Download MALLvMEDU.IM.input (406.0 Kb)
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Title PCA.ADMIXTURE.INPUT.FILES
Downloaded 2 times
Description Run-ready files for PCA and ADMIXTURE (includes *.ped and *.map) analyses are provided for 3,523 autosomal and 172 Z-linked markers.
Download PCA.ADMIXTURE.INPUT.FILES.zip (1.900 Mb)
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When using this data, please cite the original publication:

Lavretsky P, DaCosta JM, Hernández-Baños BE, Engilis Jr A, Sorenson MD, Peters JL (2015) Speciation genomics and a role for the Z chromosome in the early stages of divergence between Mexican ducks and mallards. Molecular Ecology 24(21): 5364–5378. http://dx.doi.org/10.1111/mec.13402

Additionally, please cite the Dryad data package:

Lavretsky P, DaCosta JM, Hernández-Baños BE, Engilis Jr A, Sorenson MD, Peters JL (2015) Data from: Speciation genomics and a role for the Z chromosome in the early stages of divergence between Mexican ducks and mallards. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6361n
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