Data from: Efficient detection of novel nuclear markers for Brassicaceae by transcriptome sequencing

Stockenhuber R, Zoller S, Shimizu-Inatsugi R, Gugerli F, Shimizu KK, Widmer A, Fischer MC

Date Published: July 24, 2015

DOI: http://dx.doi.org/10.5061/dryad.63j2j

 

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Title Sequence alignments for Arabis alpina Cardamine hirsuta
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Description We provide here the sequence alignment files of two transcriptome sequencing runs on a Genome Sequencer FLX (Roche, Switzerland) for pooled RNA samples of Arabis alpina and Cardamine hirsuta mapped to Arabidopsis thaliana (TAIR 9). Each sample was sequenced twice on half a picotiter plate. The alignments were used to detect conserved regions among the aforementioned species. The reads have been mapped against the five chromosomes of Arabidopsis thaliana (TAIR9) using samtools (Li et al. 2009).
Download Arabis_alpina_and_Cardamine_hirsuta_mapped.zip (200.2 Mb)
Download README.docx (67.23 Kb)
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Title Concatenated alignments for all three phylogenetic levels tested
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Download Concatenated_alignments.zip (14.78 Kb)
Download README.docx (70.32 Kb)
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When using this data, please cite the original publication:

Stockenhuber R, Zoller S, Shimizu-Inatsugi R, Gugerli F, Shimizu KK, Widmer A, Fischer MC (2015) Efficient detection of novel nuclear markers for Brassicaceae by transcriptome sequencing. PLOS ONE 10(6): e0128181. http://dx.doi.org/10.1371/journal.pone.0128181

Additionally, please cite the Dryad data package:

Stockenhuber R, Zoller S, Shimizu-Inatsugi R, Gugerli F, Shimizu KK, Widmer A, Fischer MC (2015) Data from: Efficient detection of novel nuclear markers for Brassicaceae by transcriptome sequencing. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.63j2j
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