Data from: PolyPatEx: an R package for paternity exclusion in autopolyploids

Zwart AB, Elliott C, Hopley T, Lovell D, Young A

Date Published: November 30, 2015

DOI: http://dx.doi.org/10.5061/dryad.64482

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Tetraploid Genotype dataset - Salix Cinerea
Downloaded 18 times
Description Example SSR allele (genotype) data from seven loci in a tetraploid, dioecious species, Salix cinerea. From: Hopley, T (2011) Reproductive ecology and dispersal dynamics of the invasive willow, Salix cinerea, in south-eastern Australia. Ph.D. Thesis, The Australian National University, Canberra.
Download FR_Genotype.csv (16.79 Kb)
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Title Hexaploid Allelic Phenotype dataset - Eremophila glabra ssp. glabra
Downloaded 15 times
Description Example SSR (allelic phenotype) data from seven loci in a hexaploid, monoecious species, Eremophila glabra ssp. glabra. From: Elliott, CP (2010) Patterns and processes: ecological and genetic function of fragmented Emu bush (Eremophila glabra ssp. glabra) populations. Ph.D. Thesis, The Australian National University, Canberra. Formatted for use with PolyPatEx package.
Download GF_Phenotype.csv (9.806 Kb)
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Title R script - PolyPatEx usage example.
Downloaded 16 times
Description An R script to perform the example of use of PolyPatEx in the published manuscript. Operates on the Eremophila (allelic phenotype) dataset to obtain IDs and counts of potential fathers that remain after exclusion.
Download Example.R (4.835 Kb)
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Title PolyPatEx performance simulation R scripts
Downloaded 25 times
Description R scripts to perform the simulations assessing PolyPatEx performance in the published PolyPatEx manuscript. Unzips to create a folder, "Simulation_scripts" with content.
Download Simulation_scripts.zip (14.39 Kb)
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Title Eremophila allelic phenotype dataset in COLONY-required format
Downloaded 20 times
Description The Eremophila glabra spp. glabra allelic phenotype dataset recoded for use with COLONY (Jones OR, Wang J (2002) COLONY: a program for parentage and sibship inference from multilocus genotype data. Molecular Ecology Resources, 10(3), 551–555.). Unzips to create a folder, 'COLONY_data_files', with content.
Download COLONY_data_files.zip (3.128 Kb)
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When using this data, please cite the original publication:

Zwart AB, Elliott C, Hopley T, Lovell D, Young A (2016) PolyPatEx: an R package for paternity exclusion in autopolyploids. Molecular Ecology Resources 16(3): 694-700. http://dx.doi.org/10.1111/1755-0998.12496

Additionally, please cite the Dryad data package:

Zwart AB, Elliott C, Hopley T, Lovell D, Young A (2015) Data from: PolyPatEx: an R package for paternity exclusion in autopolyploids. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.64482
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