Data from: Molecular phylogeny and chromosomal evolution of Alcelaphini (Antilopinae)

Steiner CC, Charter SJ, Houck ML, Ryder OA

Date Published: January 10, 2014

DOI: http://dx.doi.org/10.5061/dryad.65t6n

 

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Title Concatened_MrB
Downloaded 12 times
Description Nexus file of concatenated mitochondrial partitions used to perform the Bayesian phylogenetic analysis of Alcelaphini. Five partitions were considered: tRNAs (1-1512 nucleotide positions), rRNA (1513-4039), and first, second and third codon sites of the protein coding genes (4040-15439). The Bayesian inference consisted of ten million generations analysis (sampled every 1,000 generations), and a 50% burn-in.
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Title Chromosome_MP
Downloaded 12 times
Description Nexus files of 23 chromosome characters used to perform maximum parsimony phylogenetic analysis of Alcelaphini. The data matrix was established by assigning 0 or 1 values for the absence or presence of characters. MP trees were generated using a heuristic search option and phylogenetic support for each node was assessed using 1000 bootstrap replicates.
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Title ChraALL
Downloaded 7 times
Description Nexus file of 5 ambiguous chromosomal characters used to estimate ancestral states and chromosome evolution in Alcelaphini via SIMMAP.
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Title BurninMrB
Downloaded 9 times
Description Nexus file containing the 4999 post-burning Bayesian trees used to estimated the posterior probability distribution of the rate of change of 5 ambiguous chromosome characters in Alcelaphini. SIMMAP estimated ancestral states by averaging the posterior distribution over multiple trees. The number of changes is proportional to branch lengths.
Download BurninMrB.tre (1.070 Mb)
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When using this data, please cite the original publication:

Steiner CC, Charter SJ, Houck ML, Ryder OA (2014) Molecular phylogeny and chromosomal evolution of Alcelaphini (Antilopinae). Journal of Heredity 105(3): 324-333. http://dx.doi.org/10.1093/jhered/esu004

Additionally, please cite the Dryad data package:

Steiner CC, Charter SJ, Houck ML, Ryder OA (2014) Data from: Molecular phylogeny and chromosomal evolution of Alcelaphini (Antilopinae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.65t6n
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