Data from: Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.)

Meyer E, Aspinwall MJ, Lowry DB, Palacio-Mejía JD, Logan TL, Fay PA, Juenger TE

Date Published: July 11, 2014

DOI: http://dx.doi.org/10.5061/dryad.6630k

 

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Title Annotated FASTA file of custom Panicum virgatum (Alamo AP13) transcriptome assembly
Downloaded 17 times
Description A custom transcriptome assembly produced from publicly available EST data from accession Alamo AP13 (454 data from NCBI’s Sequence Read Archive: accessions SRR187765-SRR187775; Sanger sequences from cDNA libraries CFNU, CFNT, and EXTA; Zhang et al., 2013). Reads were quality filtered, screened for adaptor and vector contamination, and assembled in Roche De Novo Assembler v2.6 with the ‘-cdna’ option. This FASTA file has been compressed using the GZIP utility.
Download AlamoAP13_annotated_transcriptome.fasta.gz (52.29 Mb)
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Title AlamoAP13_transcriptome_annotations
Downloaded 7 times
Description Homology-based annotations for the custom P. virgatum Alamo AP13 transcriptome. A tab-delimited text file. Column IDs: Seq=sequence identifier; Isogroup=cluster of transcripts thought to originate from the same gene; Len=length in base pairs; Match=accession number of best match; Gene=name of the best match; GO=Gene Ontology terms associated with the best match.
Download AlamoAP13_transcriptome_annotations.tab (7.363 Mb)
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When using this data, please cite the original publication:

Meyer E, Aspinwall MJ, Lowry DB, Palacio-Mejía JD, Logan TL, Fay PA, Juenger TE (2014) Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.). BMC Genomics 15: 527. http://dx.doi.org/10.1186/1471-2164-15-527

Additionally, please cite the Dryad data package:

Meyer E, Aspinwall MJ, Lowry DB, Palacio-Mejía JD, Logan TL, Fay PA, Juenger TE (2014) Data from: Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6630k
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