Data from: Challenging the inbreeding hypothesis in a eusocial mammal: population genetics of the naked mole-rat, Heterocephalus glaber.

Ingram CM, Troendle NJ, Gill CA, Braude S, Honeycutt RL

Date Published: August 25, 2015

DOI: http://dx.doi.org/10.5061/dryad.67rq6

 

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Title Heterocephalus glaber microsatellite genotype data
Downloaded 23 times
Description Genotypes for 131 individuals of Heterocephalus glaber using 12 H. glaber specific primers. Data is in Genepop format.
Download README.txt (272 bytes)
Download Hglaber_genepop063015.txt (12.59 Kb)
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Title Partial Mantel test - msat
Downloaded 12 times
Description This is the input datafile used on the Isolation by Distance Web Service http://ibdws.sdsu.edu/~ibdws/
Download Ingram_etal_msatPartialMantel.txt (13.03 Kb)
Download README.txt (748 bytes)
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Title Ingram_etal_partialMantelDloop
Downloaded 5 times
Description This is the input file used for the partial Mantel test- dloop on the Isolation by Distance Web Service http://ibdws.sdsu.edu/~ibdws/
Download Ingram_etal_partialMantelDloop.txt (432 bytes)
Download README.txt (549 bytes)
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Title DIYABCparameter
Downloaded 37 times
Description List of the parameters used in the DIYABC analyses
Download DIYABCparameter.xlsx (30.64 Kb)
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Title Ingram_etal_dloop_alignment
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Description The nexus format alignment of dloop sequence of all the identified haplotypes. Redundent haplotypes were collapsed within locality. NCBI Accession numbers are included. Although Mtito Andei and Kathekani shared the exact same haplotype we included both sites to represent each locality.
Download Hglab_dloop_2015_hap.nex (11.42 Kb)
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Title Ingram_etal_dloop_MLtree
Downloaded 5 times
Description Maximum Likelihood tree file for Ingram et al Dloop sequences.
Download Hglab_dloop_2015_hap3.best.tre (951 bytes)
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Title Ingram_etal_collecting_info
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Description Additional information about the sample collection, including locality.
Download Ingram_etal_collecting_info.docx (20.39 Kb)
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When using this data, please cite the original publication:

Ingram CM, Troendle NJ, Gill CA, Braude S, Honeycutt RL (2015) Challenging the inbreeding hypothesis in a eusocial mammal: population genetics of the naked mole-rat, Heterocephalus glaber. Molecular Ecology 24(19): 4848–4865. http://dx.doi.org/10.1111/mec.13358

Additionally, please cite the Dryad data package:

Ingram CM, Troendle NJ, Gill CA, Braude S, Honeycutt RL (2015) Data from: Challenging the inbreeding hypothesis in a eusocial mammal: population genetics of the naked mole-rat, Heterocephalus glaber. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.67rq6
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