Data from: Inferring species networks from gene trees in high-polyploid North American and Hawaiian violets (Viola, Violaceae)

 

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Title Online_appendix_1_BEAST_input_file
Downloaded 48 times
Description Input file for BEAST generated using BEAUTY for GPI homoeolog and fossil data. Will open in a text editor
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Title Online_appendix_2_BEAST_output_chronogram
Downloaded 43 times
Description Chronogram obtained with BEAST based on GPI homoeolog sequence and fossil data, edited in FigTree. Will open in FigTree or another tree editing software.
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Title Online_appendix_3_PADRE analyses
Downloaded 81 times
Description Input multilabelled GPI gene trees (as .newick files) for PADRE, and output species networks (as graphics) from PADRE. Pdf file.
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When using this data, please cite the original publication:

Marcussen T, Jakobsen KS, Danihelka J, Ballard HE, Blaxland K, Brysting AK, Oxelman B (2011) Inferring species networks from gene trees in high-polyploid North American and Hawaiian violets (Viola, Violaceae). Systematic Biology 61(1): 107-126. http://dx.doi.org/10.1093/sysbio/syr096

Additionally, please cite the Dryad data package:

Marcussen T, Jakobsen KS, Danihelka J, Ballard HE, Blaxland K, Brysting AK, Oxelman B (2011) Data from: Inferring species networks from gene trees in high-polyploid North American and Hawaiian violets (Viola, Violaceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.68722
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