Data from: On the Biogeography of Centipeda: A Species Tree Diffusion Approach

 

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Title Centipeda_continuous_diffusion_analysis_file
Downloaded 43 times
Description Analysis file for BEAST - place in directly and make sure the polygon files and species tree file are referenced correctly
Download Centipeda_continuous_diffusion.xml (25.12 Kb)
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Title Centipeda_pruned_species_trees
Downloaded 22 times
Description Empirical distribution of time calibrated species trees, with pruned outgroup. Place in same directory as xml and polygon files.
Download Centipeda_pruned_species.trees (1.421 Mb)
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Title C_aotearoana_polygon_file
Downloaded 15 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_aotearoana.kml (21.62 Kb)
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Title C_borealis_polygon_file
Downloaded 17 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_borealis.kml (10.79 Kb)
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Title C_crateriformis_ssp_compacta_polygon_file
Downloaded 19 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_crateriformis_ssp_compacta.kml (15.72 Kb)
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Title C_crateriformis_ssp_crateriformis_polygon_file
Downloaded 13 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_crateriformis_ssp_crateriformis.kml (8.721 Kb)
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Title C_cunninghamii_polygon_file
Downloaded 14 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_cunninghamii.kml (20.23 Kb)
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Title C_elatinoides_polygon_file
Downloaded 14 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_elatinoides.kml (29.68 Kb)
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Title C_minima_ssp_macrocephala_polygon_file
Downloaded 14 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_minima_ssp_macrocephala.kml (5.46 Kb)
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Title C_minima_ssp_minima_polygon_file
Downloaded 14 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_minima_ssp_minima.kml (100.6 Kb)
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Title C_nidiformis_polygon_file
Downloaded 16 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_nidiformis.kml (12.03 Kb)
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Title C_pleiocephala_polygon_file
Downloaded 11 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_pleiocephala.kml (5.603 Kb)
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Title C_racemosa_polygon_file
Downloaded 13 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_racemosa.kml (5.097 Kb)
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Title C_thespidioides_polygon_file
Downloaded 14 times
Description Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
Download C_thespidioides.kml (7.8 Kb)
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Title Supplementary Figure S1
Downloaded 46 times
Description Species polygons in colour with starting locations (circles) and specimens sampled for species tree inference.
Download Fig. S1.jpg (285.8 Kb)
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Title Supplementary Figure S2
Downloaded 46 times
Description Species polygons in colour with starting locations (circles) and specimens sampled for species tree inference.
Download Fig. S2.jpg (325.7 Kb)
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Title Supplementary Figure S3
Downloaded 43 times
Description Species polygons in colour with starting locations (circles) and specimens sampled for species tree inference.
Download Fig. S3.jpg (361.6 Kb)
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Title Supplementary Figure S4
Downloaded 43 times
Description Species polygons in colour with starting locations (circles) and specimens sampled for species tree inference.
Download Fig. S4.jpg (314.0 Kb)
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Title Supplementary Figure S5
Downloaded 42 times
Description Species polygons in colour with starting locations (circles) and specimens sampled for species tree inference.
Download Fig. S5.jpg (321.9 Kb)
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Title Tutorial
Downloaded 314 times
Description Tutorial on how to set up and modify a species tree diffusion analysis
Download Tutorial.pdf (311.3 Kb)
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Title Appendix - Specimens list
Downloaded 47 times
Description Full list of specimens used for species tree inference with additional information on collection localities in decimal grades
Download Appendix - Specimens list_biogeo.xlsx (21.05 Kb)
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When using this data, please cite the original publication:

Nylinder S, Lemey P, de Bruyn M, Suchard MA, Pfeil BE, Walsh N, Anderberg AA (2013) On the Biogeography of Centipeda: A Species Tree Diffusion Approach. Systematic Biology 63(2): 178-191. http://dx.doi.org/10.1093/sysbio/syt102

Additionally, please cite the Dryad data package:

Nylinder S, Lemey P, de Bruyn M, Suchard MA, Pfeil BE, Walsh N, Anderberg AA (2013) Data from: On the Biogeography of Centipeda: A Species Tree Diffusion Approach. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.69329
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