Data from: Geographic variation in the Pine Barrens Treefrog (Hyla andersonii): concordance of genetic, morphometric, and acoustic signal data

Warwick AR, Travis J, Lemmon EM

Date Published: May 13, 2015

DOI: http://dx.doi.org/10.5061/dryad.6b340

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title RAxML_COIcytB
Downloaded 5 times
Description Aligned COI and cytB sequences used as RAxML input file.
Download RAxML_COIcytB.phy (24.89 Kb)
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Title RAxML_bestTree
Downloaded 6 times
Description Resulting best tree with bootstrap values generated using RAxML.
Download RAxML_bestTree.MLmtDNA_PBT (1.003 Kb)
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Title Raw acoustic data
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Description JMP raw data file used for acoustic analyses
Download Acoustic_Dryad.jmp (40.33 Kb)
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Title Raw morphometric data
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Description JMP raw data file used for morphometric analyses
Download Morpho_Dryad.jmp (56.37 Kb)
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Title Microsatellite genotype data
Downloaded 12 times
Description Raw microsatellite genotype data and input file for Genalex genetic analyses (principal coordinates)
Download Genetic_Genalex_Dryad.xlsx (189.4 Kb)
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Title Arlequin input file
Downloaded 65 times
Description Microsatellite data input file for Arlequin (Rst, AMOVA, Mantel Test)
Download Genetic_arlequin_Dryad.arp (27.17 Kb)
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Title R script for acoustic calculations
Downloaded 9 times
Description Two scripts for acoustic signal variable extraction. One calculates mean, sd, cv across calls for a single individual and generates a new data file with all individuals together; the other script calculates these values across waveforms for a single individual.
Download README.docx (79.17 Kb)
Download R_script_Acoustic_calc_CC0.r (7.401 Kb)
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Title Starting file for R script
Downloaded 3 times
Description File required to run R script for acoustic variable calculations. See details within the script document and script ReadMe file.
Download SumStats.csv (11.28 Kb)
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When using this data, please cite the original publication:

Warwick AR, Travis J, Lemmon EM (2015) Geographic variation in the Pine Barrens Treefrog (Hyla andersonii): concordance of genetic, morphometric, and acoustic signal data. Molecular Ecology 24(13): 3281-3298. http://dx.doi.org/10.1111/mec.13242

Additionally, please cite the Dryad data package:

Warwick AR, Travis J, Lemmon EM (2015) Data from: Geographic variation in the Pine Barrens Treefrog (Hyla andersonii): concordance of genetic, morphometric, and acoustic signal data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6b340
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