Data from: Carving out turf in a biodiversity hotspot: multiple, previously unrecognized shrew species co-occur on Java Island, Indonesia

Esselstyn JA, Maharadatunkamsi -, Achmadi AS, Siler CD, Evans BJ

Date Published: July 16, 2013

DOI: http://dx.doi.org/10.5061/dryad.6dn5p

 

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Title mtDNA Alignment
Downloaded 5 times
Description Nexus file containing 66 unique haplotypes of cytochrome b from Southeast Asian shrews. This alignment was used to generate the gene tree in Figure 2.
Download mtDNA.unique.haplotypes.nex (76.26 Kb)
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Title ApoB Alignment
Downloaded 5 times
Description Nexus file containing phased alleles from Apolipoprotein B sequences of Javan Crocidura. This alignment was used to generate the gene tree in Figure S1.
Download ApoB.all.java.with.localities.nex (132.4 Kb)
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Title BDNF Alignment
Downloaded 3 times
Description Nexus file containing phased alleles from BDNF sequences of Javan Crocidura. This alignment was used to generate the gene tree in Figure S1.
Download BDNF.all.java.with.localities.nex (100.8 Kb)
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Title BRCA1 Alignment
Downloaded 3 times
Description Nexus file containing phased alleles from BRCA1 sequences of Javan Crocidura. This alignment was used to generate the gene tree in Figure S1.
Download BRCA1.all.java.with.localities.nex (131.7 Kb)
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Title GHR Alignment
Downloaded 4 times
Description Nexus file containing phased alleles from GHR sequences of Javan Crocidura. This alignment was used to generate the gene tree in Figure S1.
Download GHR10.all.java.with.localities.nex (135.7 Kb)
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Title MCGF Alignment
Downloaded 3 times
Description Nexus file containing phased alleles from MCGF sequences of Javan Crocidura. This alignment was used to generate the gene tree in Figure S1.
Download MCGF.all.java.with.localities.nex (109.5 Kb)
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Title PTGER4 Alignment
Downloaded 2 times
Description Nexus file containing phased alleles from PTGER4 sequences of Javan Crocidura. This alignment was used to generate the gene tree in Figure S1.
Download PTGER.all.java.with.localities.nex (116.0 Kb)
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Title RAG1 Alignment
Description Nexus file containing phased alleles from RAG1 sequences of Javan Crocidura. This alignment was used to generate the gene tree in Figure S1.
Download Rag1.all.java.with.localities.nex (116.5 Kb)
Details View File Details
Title vWF Alignment
Downloaded 2 times
Description Nexus file containing phased alleles from vWF sequences of Javan Crocidura. This alignment was used to generate the gene tree in Figure S1.
Download vWF.all.java.with.localities.nex (155.0 Kb)
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When using this data, please cite the original publication:

Esselstyn JA, Maharadatunkamsi -, Achmadi AS, Siler CD, Evans BJ (2013) Carving out turf in a biodiversity hotspot: multiple, previously unrecognized shrew species co-occur on Java Island, Indonesia. Molecular Ecology 22(19): 4972–4987. http://dx.doi.org/10.1111/mec.12450

Additionally, please cite the Dryad data package:

Esselstyn JA, Maharadatunkamsi -, Achmadi AS, Siler CD, Evans BJ (2013) Data from: Carving out turf in a biodiversity hotspot: multiple, previously unrecognized shrew species co-occur on Java Island, Indonesia. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6dn5p
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