Data from: Climate-driven mitochondrial selection: a test in Australian songbirds

Lamb A, Gan HM, Greening C, Joseph L, Lee Y, Morán-Ordóñez A, Sunnucks P, Pavlova A

Date Published: December 11, 2017

DOI: https://doi.org/10.5061/dryad.6fb64

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Title Zip file with 15 xml files used as input for 15 Beast analyses of ND2 data
Downloaded 5 times
Description Beast xml input files: ND2 alignments with models from Partition Finder for 15 species/species complex
Download ND2_Beast_xml_files.zip (64.77 Kb)
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Title Zip file with 4 tree files used as input for CODEML branch- and branch-and-site models
Downloaded 2 times
Description Input trees for CODEML branch- and branch-and-site models for testing for signatures of parallel selection in mitolineages of different species co-occurring in four climate categories: regions that are least temperate, most temperate, least arid and most arid.
Download CODEML_input_mitogenome_trees_4_climate_e...es.zip (2.852 Kb)
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Title Zip with 2 files: whole mitogenome alignment in nexus format and phylogenetic tree
Downloaded 1 time
Description Two files: (1) whole mitogenome alignment in nexus format used for MrBayes phylogenetic analysis (rooted with lyrebird and partitioned as per PartitionFinder results), and (2) the 50% majority rule tree resulting from MrBayes analysis.
Download WholeMitogenome_Lyrebird_Partitioned.zip (155.0 Kb)
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Title Nexus alignment of 3796 codons for 13 mitochondrial coding genes
Downloaded 2 times
Description Coding gene alignment (11,388 nucleotides, 41 individuals) used for selection analyses, in nexus format
Download Birds_MitogenomeAlignment_Coding_Concaten...ee.nex (469.2 Kb)
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When using this data, please cite the original publication:

Lamb AM, Gan HM, Greening C, Joseph L, Lee YP, Morán-Ordóñez A, Sunnucks P, Pavlova A (2018) Climate-driven mitochondrial selection: a test in Australian songbirds. Molecular Ecology, online in advance of print. https://doi.org/10.1111/mec.14488

Additionally, please cite the Dryad data package:

Lamb A, Gan HM, Greening C, Joseph L, Lee Y, Morán-Ordóñez A, Sunnucks P, Pavlova A (2018) Data from: Climate-driven mitochondrial selection: a test in Australian songbirds. Dryad Digital Repository. https://doi.org/10.5061/dryad.6fb64
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