Data from: Divergent clades or cryptic species? mito-nuclear discordance in a Daphnia species complex

Thielsch A, Knell A, Mohammadyari A, Petrusek A, Schwenk K

Date Published: November 14, 2017

DOI: https://doi.org/10.5061/dryad.6jd34

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Title Multilocus genotype data of Daphnia longispina complex
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Description This file contains the microsatellite data from the publication formatted as input file for the program Genetix, which was used to calculate a factorial correspondence analysis that is presented in the publication.
Download Genetix data file.txt (29.39 Kb)
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Title Structure data file_complete dataset
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Description This is an input file for the clustering software Structure that contains multilocus genotype data of several taxa of the Daphnia longispina complex (Daphnia longispina = 103 individuals; D. galeata = 134 individuals; D. cucullata = 75 individuals; Daphnia divergent mitochondrial clade I = 3 individuals; Daphnia divergent mitochondrial clade II = 11; Daphnia divergent mitochondrial clade III = 35 individuals). Information on the microsatellite loci as well as the populations are available in the publication or in the additional file associated to the publication.
Download Structure data file_complete dataset.txt (32.26 Kb)
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Title Structure results K=1-10_complete dataset
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Description This file contains the results of the Structure analysis presented in the publication using the whole dataset. The zipfile includes the Evanno table as well as the indfiles for K1-10 that were obtained from Structure Harvester.
Download Structure_results_complete_dataset.zip (196.2 Kb)
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Title Structure parameter file_complete dataset
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Description This file summarizes the Structure parameters that were used to obtain the results for the whole dataset presented in the publication.
Download Structure parameter file_complete dataset.txt (1.232 Kb)
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Title Structure date file_subset longispina
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Description This is an input file for the clustering software Structure that contains multilocus genotype data of Daphnia longispina (N = 103), Daphnia divergent mitochondrial clade II (N = 8), and Daphnia divergent mitochondrial clade III (N = 9). Information on the microsatellite loci as well as the populations are available in the publication or in the additional file associated to this publication.
Download Structure date file_subset longispina.txt (10.76 Kb)
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Title Structure parameter file_subset longispina
Description This file summarizes the Structure parameters that were used to obtain the results of the taxon D. longispina (including individuals belonging to mitochondrial clade II and III) presented in the publication.
Download Structure parameter file_subset longispina.txt (1.238 Kb)
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Title Structure results K=1-15_subset longispina
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Description This file contains the results of the Structure analysis of D. longispina (including individuals belonging to divergent clades II and III) presented in the publication. The zipfile includes the Evanno table as well as the indfiles for K1-15 that were obtained from Structure Harvester.
Download Structure_results_subset_longispina.zip (151.4 Kb)
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When using this data, please cite the original publication:

Thielsch A, Knell A, Mohammadyari A, Petrusek A, Schwenk K (2017) Divergent clades or cryptic species? Mito-nuclear discordance in a Daphnia species complex. BMC Evolutionary Biology 17(1): null. https://doi.org/10.1186/s12862-017-1070-4

Additionally, please cite the Dryad data package:

Thielsch A, Knell A, Mohammadyari A, Petrusek A, Schwenk K (2017) Data from: Divergent clades or cryptic species? mito-nuclear discordance in a Daphnia species complex. Dryad Digital Repository. https://doi.org/10.5061/dryad.6jd34
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