Data from: An evaluation of the hybrid speciation hypothesis for Xiphophorus clemenciae based on whole genome sequences

 

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Title msshellmigration
Downloaded 30 times
Description script to simulate expected divergence under an allopatric speciation model with limited migration using the msHOT program. Usage: perl msshellmigration.pl
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Title msshelladmix
Downloaded 24 times
Description script to simulate expected divergence under a hybrid speciation model using the msHOT program. Usage: perl msshelladmix.pl
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Title msshell_largetheta
Downloaded 22 times
Description script to simulate expected divergence under an allopatric speciation model with a large ancestral theta using the msHOT program. Usage: perl msshell_largetheta.pl
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Title mspositionswindows
Downloaded 31 times
Description Companion script to simulation scripts msshell_largetheta.pl msshelladmix.pl and msshellmigration.pl which takes the output of ms or msHOT and calculates divergence between simulated sequences.
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When using this data, please cite the original publication:

Schumer M, Cui R, Boussau B, Walter RB, Rosenthal GG, Andolfatto P (2012) An evaluation of the hybrid speciation hypothesis for Xiphophorus clemenciae based on whole genome sequences. Evolution 67(4): 1155-1168. http://dx.doi.org/10.1111/evo.12009

Additionally, please cite the Dryad data package:

Schumer M, Cui R, Boussau B, Walter RB, Rosenthal GG, Andolfatto P (2012) Data from: An evaluation of the hybrid speciation hypothesis for Xiphophorus clemenciae based on whole genome sequences. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6k7gh
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