Data from: Zika virus in the Americas: early epidemiological and genetic findings

Faria NR, Azevedo RdSdS, Kraemer MUG, Souza R, Cunha MS, Hill SC, Thezé J, Bonsall MB, Bowden TA, Rissanen I, Rocco IM, Nogueira JS, Maeda AY, Vasami FGdS, Macedo FLdL, Suzuki A, Rodrigues SG, Cruz ACR, Diniz BT, Medeiros DBdA, Rodrigues DSG, Queiroz ALN, da Silva EVP, Henriques DF, da Rosa EST, de Oliveira CS, Martins LC, Vasconcelos HB, Casseb LMN, Simith DdB, Messina JP, Abade L, Lourenço J, Alcantara LCJ, de Lima MM, Giovanetti M, Hay SI, de Oliveira RS, Lemos PdS, de Oliveira LF, de Lima CPS, da Silva SP, de Vasconcelos JM, Franco L, Cardoso JF, Vianez-Júnior JLdSG, Mir D, Bello G, Delatorre E, Khan K, Creatore M, Coelho GE, de Oliveira WK, Tesh R, Pybus OG, Nunes MRT, Vasconcelos PFC

Date Published: March 25, 2016

DOI: http://dx.doi.org/10.5061/dryad.6kn23

 

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Title Epidemiological Data: Numbers of suspected ZIKV cases and suspected microcephaly cases per state and per epidemiological week.
Downloaded 275 times
Description Contains 1) CSV file with number suspected ZIKV cases from January 2015 to the end of December 2015; 2) CSV file with number of suspected microcephaly cases from January 2015 to the first week of January 2016. Numbers correspond to suspected microcephaly cases at week 20 of pregnancy; 3) CSV file with codes of state of residence and municipality of residence in Brazil; and 4) R scripts for correlation analysis described in SI Section 1.5.
Download Epidemiological Data.zip (62.36 Kb)
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Title Sequence data details and alignments for dataset A and B.
Downloaded 76 times
Description Contains (1) table with accession numbers, isolate names, cell passage history, publication details, country/location of sampling, sampling dates and (2) Fasta format sequence alignments of datasets A and B.
Download Sequence Data.zip (262.6 Kb)
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Title BEAST XML input file used for genetic analysis.
Downloaded 61 times
Description BEAST XML input file used to generate Figure 3 under a strict clock model, a Bayesian skyline coalescent prior and a CTMC prior on the clock rate.
Download ZIKV_with1966_strict_skyline_ctmc.xml (288.8 Kb)
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When using this data, please cite the original publication:

Faria NR, Azevedo RdSdS, Kraemer MUG, Souza R, Cunha MS, Hill SC, Thezé J, Bonsall MB, Bowden TA, Rissanen I, Rocco IM, Nogueira JS, Maeda AY, Vasami FGdS, Macedo FLdL, Suzuki A, Rodrigues SG, Cruz ACR, Diniz BT, Medeiros DBdA, Rodrigues DSG, Queiroz ALN, da Silva EVP, Henriques DF, da Rosa EST, de Oliveira CS, Martins LC, Vasconcelos HB, Casseb LMN, Simith DdB, Messina JP, Abade L, Lourenço J, Alcantara LCJ, de Lima MM, Giovanetti M, Hay SI, de Oliveira RS, Lemos PdS, de Oliveira LF, de Lima CPS, da Silva SP, de Vasconcelos JM, Franco L, Cardoso JF, Vianez-Júnior JLdSG, Mir D, Bello G, Delatorre E, Khan K, Creatore M, Coelho GE, de Oliveira WK, Tesh R, Pybus OG, Nunes MRT, Vasconcelos PFC (2016) Zika virus in the Americas: early epidemiological and genetic findings. Science 352(6283): 345-349. http://dx.doi.org/10.1126/science.aaf5036

Additionally, please cite the Dryad data package:

Faria NR, Azevedo RdSdS, Kraemer MUG, Souza R, Cunha MS, Hill SC, Thezé J, Bonsall MB, Bowden TA, Rissanen I, Rocco IM, Nogueira JS, Maeda AY, Vasami FGdS, Macedo FLdL, Suzuki A, Rodrigues SG, Cruz ACR, Diniz BT, Medeiros DBdA, Rodrigues DSG, Queiroz ALN, da Silva EVP, Henriques DF, da Rosa EST, de Oliveira CS, Martins LC, Vasconcelos HB, Casseb LMN, Simith DdB, Messina JP, Abade L, Lourenço J, Alcantara LCJ, de Lima MM, Giovanetti M, Hay SI, de Oliveira RS, Lemos PdS, de Oliveira LF, de Lima CPS, da Silva SP, de Vasconcelos JM, Franco L, Cardoso JF, Vianez-Júnior JLdSG, Mir D, Bello G, Delatorre E, Khan K, Creatore M, Coelho GE, de Oliveira WK, Tesh R, Pybus OG, Nunes MRT, Vasconcelos PFC (2016) Data from: Zika virus in the Americas: early epidemiological and genetic findings. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6kn23
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