Data from: Genomic divergence in a ring species complex

Alcaide M, Scordato ESC, Price TD, Irwin DE

Date Published: May 26, 2014

DOI: http://dx.doi.org/10.5061/dryad.6kn93

 

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Title Greenish warbler sequences and SNPs mapped on zebra finch genome
Downloaded 21 times
Description Greenish warbler sequences mapped on zebra finch genome assembly (pink annotations). The physical location of SNP markers is also indicated. Grey annotations refer to the set of 81,034 SNPs with data in at least 80% of individuals (N=95 birds). Yellow annotations refer to the subset of 2,334 SNPs with no missing data and minimum coverage = 3 reads. Blue annotations refer to the 1,827 SNP markers used during the chromosome-by-chromosome introgression analysis. These assemblies can be inspected in the free version of the Geneious genomic workbench, which can be downloaded from http://www.geneious.com/download.
Download Greenish Warbler Assemblies on ZF.geneious (381.3 Mb)
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Title Greenish Warbler De Novo Assembly Draft
Downloaded 13 times
Description De Novo Assembly of a whole-genome sequencing library from one Phylloscopus trochiloides viridanus bird (SRA accession number: SRX473141). De Novo Assembly was carried out in the CLC genomic workbench and following the default parameters set by the developer.
Download GWDeNovoAssembly.gz (303.2 Mb)
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When using this data, please cite the original publication:

Alcaide M, Scordato ESC, Price TD, Irwin DE (2014) Genomic divergence in a ring species complex. Nature 511: 83-85. http://dx.doi.org/10.1038/nature13285

Additionally, please cite the Dryad data package:

Alcaide M, Scordato ESC, Price TD, Irwin DE (2014) Data from: Genomic divergence in a ring species complex. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6kn93
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