Data from: Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster

Dunn JG, Foo CK, Belletier NG, Gavis ER, Weissman JS

Date Published: December 4, 2013

DOI: http://dx.doi.org/10.5061/dryad.6nr73

 

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Title Raw sequencing data
Description Raw and processed high-throughput sequencing data, including both ribosome profiling and mRNA-seq experiments, for 0-2 hour Drosophila embryos and S2 cells. Reduced genomic alignments are additionally supplied as Wiggle files. See sample description at GEO for additional information.
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Title Supplementary table 1 - gene expression measurements in 0-2 hour Drosophila embryos and S2 cells
Downloaded 134 times
Description Gene expression data including ribosome profiling and RNA-seq for 0-2 hour embryos and S2 cells. Source data for Figures 1 and 2, as well as their supplements. Data are supplied as a tab-delimited text file. Descriptions of columns and units and other metadata are included in header lines which begin with "##". Column headings are included in a header line beginning with "#". Data follow below
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Title Supplementary table 2 - readthrough statistics for Drosophlia melanogaster
Downloaded 139 times
Description Source data for Figs. 3, 4, and 6, as well as their supplements. Includes annotations and measurements of readthrough events in Drosophila melanogaster, as well as conservation data (PhyloCSF scores), Z-curve scores, and all related summary statistics. Data are supplied as a tab-delimited text file. Descriptions of columns, units, and other metadata are included in header lines which begin with "##". Column headings are included in a header line beginning with "#". Data follow below the headers.
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Title Supplementary table 3 - readthrough statistics for Saccharomyces cerevisiae
Downloaded 105 times
Description Source data for Fig. 5 and annotations of readthrough events in [psi-] W303 yeast. Data are supplied as a tab-delimited text file. Descriptions of columns and units and other metadata are included in header lines which begin with "##". Column headings are included in a header line beginning with "#". Data follow below the headers.
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Title Supplementary table 4 - readthrough statistics for human foreskin fibroblasts
Downloaded 129 times
Description Source data for Fig. 5 and annotations of readthrough events in human foreskin fibroblasts. Data are supplied as a tab-delimited text file. Descriptions of columns and units and other metadata are included in header lines which begin with "##". Column headings are included in a header line beginning with "#". Data follow below the headers.
Download table_s4_human_readthrough_master.txt.bz2 (10.71 Kb)
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When using this data, please cite the original publication:

Dunn JG, Foo CK, Belletier NG, Gavis ER, Weissman JS (2013) Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster. eLife 2: e01179. http://dx.doi.org/10.7554/eLife.01179

Additionally, please cite the Dryad data package:

Dunn JG, Foo CK, Belletier NG, Gavis ER, Weissman JS (2013) Data from: Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6nr73
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