Data from: Divergent transcriptional responses to low temperature among populations of alpine and lowland species of New Zealand stick insects (Micrarchus)

Dunning LT, Dennis AB, Sinclair BJ, Newcomb RD, Buckley TR

Date Published: April 23, 2014

DOI: http://dx.doi.org/10.5061/dryad.6p5t3

 

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Title Micrarchus nov. sp. 2 from Mt. Arthur annotated transcriptome assembly
Downloaded 16 times
Description Trinity assembled illumina de novo trasncriptome for Micrarchus nov. sp. 2 from Mt. Arthur annotated using BLASTx against NCBI swissprot with e-value cutoff e-10
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Title Micrarchus nov. sp. 2 from Sewell Peak annotated transcriptome assembly
Downloaded 18 times
Description Trinity assembled illumina de novo trasncriptome for Micrarchus nov. sp. 2 from Sewell Peak annotated using BLASTx against NCBI swissprot with e-value cutoff e-10
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Title Micrarchus hystriculeus from paengaroa annotated transcriptome assembly
Downloaded 5 times
Description Trinity assembled illumina de novo trasncriptome for Micrarchus hystriculeus from paengaroa annotated using BLASTx against NCBI swissprot with e-value cutoff e-10
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Title Differential expression results for Micrarchus stick insects
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Description Differential expression results for Micrarhcus stick insects using edgeR, DESeq and baySeq
Download Micrarchus_Differential_Expression_Results.xlsx (15.04 Mb)
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Title Micrarchus raw qPCR data
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Description raw qPCR data
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Title Micrarchus SNP data
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Description Micrarchus SNP data used to determine population structure
Download Micrarchus_SNP_data.vcf (22.17 Mb)
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Title 28S alignment
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Description 28S alignment, for detail information for each sample or which sample belongs to which haplotype, please see supplementary information for the manuscript
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Title mtDNA (COI/COII) alignment
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Description mtDNA(COI/COII) alignment, for detail information for each sample or which sample belongs to which haplotype, please see supplementary information for the manuscript
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Title 28S MrBayes tree file
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Description 28S MrBayes tree file, for detail information for each sample or which sample belongs to which haplotype and parameters used to construct th tree please see the manuscript and supplementary information
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Title mtDNA (COI/COII) MrBayes tree file
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Description mtDNA (COI/COII) MrBayes tree file, for detail information for each sample or which sample belongs to which haplotype and parameters used to construct th tree please see the manuscript and supplementary information
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When using this data, please cite the original publication:

Dunning LT, Dennis AB, Sinclair BJ, Newcomb RD, Buckley TR (2014) Divergent transcriptional responses to low temperature among populations of alpine and lowland species of New Zealand stick insects (Micrarchus). Molecular Ecology 23(11): 2712-2726. http://dx.doi.org/10.1111/mec.12767

Additionally, please cite the Dryad data package:

Dunning LT, Dennis AB, Sinclair BJ, Newcomb RD, Buckley TR (2014) Data from: Divergent transcriptional responses to low temperature among populations of alpine and lowland species of New Zealand stick insects (Micrarchus). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6p5t3
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