Dryad Digital Repository
→
Main
→
Dryad Data Files
→
View Item

filter_fasta.py

When using this data, please cite the original article:

Hinchliff CE, Roalson EH (2012) Using supermatrices for phylogenetic inquiry: an example using the sedges. Systematic Biology 62(2): 205-219.doi:10.1093/sysbio/sys088

Additionally, please cite the Dryad data package:

Hinchliff CE and Roalson EH (2012) Data from: Using supermatrices for phylogenetic inquiry: an example using the sedges. Dryad Digital Repository. doi:10.5061/dryad.6p76c3pb

Cite |

Download the data package citation in the following formats:

RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)

BibTex (compatible with BibDesk, LaTeX)

DOI	doi:10.5061/dryad.6p76c3pb/8
Pageviews	165
Downloaded	116 times
Keywords	decisiveness
Date Submitted	2012-11-15T18:36:29Z
Contained in Data Package	Data from: Using supermatrices for phylogenetic inquiry: an example using the sedges.
Description Usage: ./filter_fasta.py [path to input dir] [path to accepted taxon list]. Input files are expected to be in fasta format. The script will traverse all files in the input dir, so the input dir should contain only fasta files. The taxon list should be a line-delimited text file containing the names of tips as they correspond to those in the fasta alignments.