Data from: Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands

Rocha S, Posada D, Harris DJ

Date Published: March 27, 2013

DOI: http://dx.doi.org/10.5061/dryad.6q3t1

 

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Title 1_phelsuma_citb_haps
Downloaded 36 times
Description Haplotype data used for phylogenetic inference from mtDNA (tree from Figure 2)
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Title 2_phelsuma_variability_estimates_networks
Downloaded 19 times
Description fasta-formated data from cytb and nuclear genes (infered phases) used for genetic variability estimates, neutrality tests and haplotype networks. Divided by groups as in Table 1. Non resolved phases (<80PP) are coded as N. "Outer" islands and "migrants" (see ms) are indicated and were not used for variability estimates and neutrality tests. Check file for internal comments.
Download 2_phelsuma_variability_estimates_networks.fas (796.0 Kb)
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Title 3_IMa2_inputfile_betweenspecies
Downloaded 17 times
Description input file for Ima2 inference between species
Download 3_IMa2_inputfile_betweenspecies.u (623.3 Kb)
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Title 4_IMa2_inputfile_Pastriata
Downloaded 17 times
Download 4_IMa2_inputfile_Pastriata.u (324.9 Kb)
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Title 5_IMa2_inputfile_Psundbergi
Downloaded 13 times
Description input file for Ima2 inference within P. sundbergi
Download 5_IMa2_inputfile_Psundbergi.u (264.5 Kb)
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Title 6_SBeast_SpeciesTreeDataset_allgenes
Downloaded 25 times
Description nexus files used for species-tree inference (subset of individuals of each lineage of each species)
Download 6_SBeast_SpeciesTreeDataset_allgenes.nex (455.4 Kb)
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When using this data, please cite the original publication:

Rocha S, Posada D, Harris DJ (2013) Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands. BMC Evolutionary Biology 13: 3. http://dx.doi.org/10.1186/1471-2148-13-3

Additionally, please cite the Dryad data package:

Rocha S, Posada D, Harris DJ (2013) Data from: Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6q3t1
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