Data from: The impact of reconstruction methods, phylogenetic uncertainty and branch lengths on inference of chromosome number evolution in American daisies (Melampodium, Asteraceae)

McCann J, Schneeweiss GM, Stuessy TF, Villaseñor JL, Weiss-Schneeweiss H

Date Published: September 14, 2016

DOI: http://dx.doi.org/10.5061/dryad.6r12h

 

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Title Dataset ITS-B (alignment and phylogenetic trees used for analyses)
Downloaded 3 times
Description Nexus file containing sequence alignment of nuclear ITS sequences and 4,500 phylogenetic trees (obtained using BEAST) used for chromosome number reconstruction
Download dataset_ITS_BEAST.nex (6.171 Mb)
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Title Dataset ITS-MB (alignment and phylogenetic trees used for analyses)
Description Nexus file containing sequence alignment of nuclear ITS sequences and 4,500 phylogenetic trees (obtained using MrBayes; out-groups removed) used for chromosome number reconstruction
Download dataset_ITS_MrBayes.nex (4.250 Mb)
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Title Dataset matK-B (alignment and phylogenetic trees used for analyses)
Description Nexus file containing sequence alignment of plastid matK sequences and 4,500 phylogenetic trees (obtained using BEAST) used for chromosome number reconstruction
Download dataset_matK_BEAST.nex (5.533 Mb)
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Title Dataset matK-MB (alignment and phylogenetic trees used for analyses)
Description Nexus file containing sequence alignment of plastid matK sequences and 4,500 phylogenetic trees (obtained using MrBayes; out-groups removed) used for chromosome number reconstruction
Download dataset_matK_MrBayes.nex (4.094 Mb)
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When using this data, please cite the original publication:

McCann J, Schneeweiss GM, Stuessy TF, Villaseñor JL, Weiss-Schneeweiss H (2016) The impact of reconstruction methods, phylogenetic uncertainty and branch lengths on inference of chromosome number evolution in American daisies (Melampodium, Asteraceae). PLOS ONE 11(9): e0162299. http://dx.doi.org/10.1371/journal.pone.0162299

Additionally, please cite the Dryad data package:

McCann J, Schneeweiss GM, Stuessy TF, Villaseñor JL, Weiss-Schneeweiss H (2016) Data from: The impact of reconstruction methods, phylogenetic uncertainty and branch lengths on inference of chromosome number evolution in American daisies (Melampodium, Asteraceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6r12h
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