Data from: Sequence co-evolution gives 3D contacts and structures of protein complexes

Hopf TA, Schärfe CPI, Rodrigues JPGLM, Green AG, Sander C, Bonvin AMJJ, Marks DS

Date Published: October 2, 2014

DOI: http://dx.doi.org/10.5061/dryad.6t7b8

 

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Title EVcomplex Supplementary Data
Downloaded 692 times
Description This archive contains all supplementary data described in the manuscript "Sequence co-evolution gives 3D contacts and structures of protein complexes". This includes the input alignments for the method, EVcomplex results, docking in- and outputs as well as data for predicted monomer models of ATP synthase subunit a and UMUC.
Download README.txt (1.352 Kb)
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Title EVcomplex Supplementary Data: Alignments
Downloaded 81 times
Description A subset of the full supplementary archive containing only the concatenated sequence alignments.
Download 01_Alignments.tar.gz (398.9 Mb)
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Title EVcomplex Supplementary Data: Coupling Predictions
Downloaded 39 times
Description A subset of the full supplementary data archive containing the EVcomplex output for the test set and the de novo prediction set.
Download 03_EVcomplex_dataset.tar.gz (337.0 Mb)
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Title EVcomplex Supplementary Data: Genome distance distribution
Downloaded 28 times
Description A subset of the full EVcomplex supplementary data archive with only the genome distance distribution plots showing the distance for each concatenated sequence pair.
Download 02_Genome_distance_plots.tar.gz (2.534 Mb)
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Title EVcomplex Supplementary Data: Protein-protein docking
Downloaded 31 times
Description A subset of the full EVcomplex supplementary data archive containing the input files used for HADDOCK docking and the best models for each of the docking runs.
Download 04_Docking.tar.gz (75.55 Mb)
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Title EVcomplex Supplementary Data: ATP synthase data
Downloaded 24 times
Description A subset of the full EVcomplex supplementary data archive containing all ATP synthase related data including EVcomplex predictions and the EVfold de novo ATP synthase subunit a models.
Download 05_ATP_synthase_predictions.tar.gz (148.0 Mb)
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Title EVcomplex Supplementary Data: UmuC model
Downloaded 19 times
Description A subset of the full EVcomplex supplementary data archive containing the data related to the EVfold de novo prediction of UmuC.
Download 06_UmuC_model.tar.gz (90.19 Mb)
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When using this data, please cite the original publication:

Hopf TA, Schärfe CPI, Rodrigues JPGLM, Green AG, Kohlbacher O, Sander C, Bonvin AMJJ, Marks DS (2014) Sequence co-evolution gives 3D contacts and structures of protein complexes. eLife 3: e03430. http://dx.doi.org/10.7554/eLife.03430

Additionally, please cite the Dryad data package:

Hopf TA, Schärfe CPI, Rodrigues JPGLM, Green AG, Sander C, Bonvin AMJJ, Marks DS (2014) Data from: Sequence co-evolution gives 3D contacts and structures of protein complexes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6t7b8
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