Data from: Evolutionary origins and diversification of proteobacterial mutualists

Sachs JL, Skophammer RG, Bansal N, Stajich JE

Date Published: July 1, 2014

DOI: http://dx.doi.org/10.5061/dryad.6v06v

 

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Title TB2:S14910
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Description Consensus species tree from MrBayes
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Title 405taxa MrBayes analysis with sampled trees
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Description MrBayes input and output results for the concatenated genes to determine species tree of the proteobacteria and sampled posterior trees to provide sampling for phylogenetic uncertainty in ancestral state reconstruction.
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Title Diversitree analyses
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Description The diversitree analysis for ancestral state reconstruction
Download Feb2013.p-value.3FreeRates.tar.gz (31.48 Mb)
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Title r8s analysis to rate smooth the tree to ultrametric
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Description To generate an ultrametric tree for diversitree a tree from the MrBayes posterior was rate smoothed with r8s
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Title BayesTraits input files
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Description BayesTraits input files for running BT. The actual running requires specifically setting
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When using this data, please cite the original publication:

Sachs JL, Skophammer RG, Bansal N, Stajich JE (2013) Evolutionary origins and diversification of proteobacterial mutualists. Proceedings of the Royal Society B 281(1775): 20132146. http://dx.doi.org/10.1098/rspb.2013.2146

Additionally, please cite the Dryad data package:

Sachs JL, Skophammer RG, Bansal N, Stajich JE (2013) Data from: Evolutionary origins and diversification of proteobacterial mutualists. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6v06v
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