Data from: A population genomic scan in Chorthippus grasshoppers unveils previously unknown phenotypic divergence

Berdan EL, Mazzoni CJ, Waurick I, Roehr JT, Mayer F

Date Published: June 15, 2015

DOI: http://dx.doi.org/10.5061/dryad.6vp96

 

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Title Transcriptome
Downloaded 13 times
Description Reference transcriptome for C. biguttulus as a fasta file
Download Cbig_consRef.fasta (83.24 Mb)
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Title finalfiltered.molbru.males.recode
Downloaded 7 times
Description VCF file containing filtered SNPs from the C. mollis / C. brunneus male comparison
Download finalfiltered.molbru.males.recode.vcf (29.52 Mb)
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Title finalfiltered.molbru.females.recode
Downloaded 7 times
Description VCF file containing filtered SNPs from the C. mollis / C. brunneus female comparison.
Download finalfiltered.molbru.females.recode.vcf (24.31 Mb)
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Title finalfiltered_brumol_maf10.recode
Downloaded 4 times
Description VCF file containing filtered SNPs from the C. mollis / C. brunneus comparison.
Download finalfiltered_brumol_maf10.recode.vcf (32.09 Mb)
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Title finalfiltered.molbig.good.recode
Downloaded 5 times
Description VCF file containing filtered SNPs from the C. mollis / C. biguttulus comparison.
Download finalfiltered.molbig.good.recode.vcf (37.15 Mb)
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Title finalfiltered.molbig.good.males.recode
Downloaded 6 times
Description VCF file containing filtered SNPs from the C. mollis / C. biguttulus male comparison.
Download finalfiltered.molbig.good.males.recode.vcf (28.96 Mb)
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Title finalfiltered.molbig.good.females.recode
Downloaded 5 times
Description VCF file containing filtered SNPs from the C. mollis / C. biguttulus female comparison
Download finalfiltered.molbig.good.females.recode.vcf (22.44 Mb)
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Title finalfiltered_bigbru_maf10.recode
Downloaded 2 times
Description VCF file containing filtered SNPs for the C. biguttulus / C. brunneus comparison
Download finalfiltered_bigbru_maf10.recode.vcf (34.73 Mb)
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Title finalfiltered.bigbru.males.recode
Downloaded 5 times
Description VCF file with filtered SNPs for the C. biguttulus / C. brunneus male comparison
Download finalfiltered.bigbru.males.recode.vcf (30.81 Mb)
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Title finalfiltered.bigbru.females.recode
Downloaded 3 times
Description VCF file with filtered SNPs from the C. biguttulus / C. brunneus female comparison
Download finalfiltered.bigbru.females.recode.vcf (27.03 Mb)
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Title Lositan files 2
Downloaded 6 times
Description Compressed folder containing input files for LOSITAN. Bigbru - C. biguttulus / C. brunneus, Molbru - C. mollis / C. brunneus, Molbig - C. mollis / C. biguttulus
Download Lositan files 2.zip (4.970 Mb)
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Title Bayescan input files
Downloaded 11 times
Description Compressed folder containing input files for BayeScan. Bigbru - C. biguttulus / C. brunneus, Molbru - C. mollis / C. brunneus, Molbig - C. mollis / C. biguttulus
Download Bayescan input files.zip (1.671 Mb)
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Title Structure Files
Downloaded 5 times
Description Compressed folder containing input files for Structure. Bigbru - C. biguttulus / C. brunneus, Molbru - C. mollis / C. brunneus, Molbig - C. mollis / C. biguttulus
Download Structure Files.zip (538.1 Kb)
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Title PopGen_grasshopper_IDs
Downloaded 12 times
Description Species, sex, and population information for the IDs used in the VCF, Bayescan, Lositan, and Structure files.
Download PopGen_grasshopper_IDs.xlsx (11.61 Kb)
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When using this data, please cite the original publication:

Berdan EL, Mazzoni CJ, Waurick I, Roehr JT, Mayer F (2015) A population genomic scan in Chorthippus grasshoppers unveils previously unknown phenotypic divergence. Molecular Ecology 24(15): 3918–3930. http://dx.doi.org/10.1111/mec.13276

Additionally, please cite the Dryad data package:

Berdan EL, Mazzoni CJ, Waurick I, Roehr JT, Mayer F (2015) Data from: A population genomic scan in Chorthippus grasshoppers unveils previously unknown phenotypic divergence. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6vp96
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