Data from: From the mountains to the coast and back again: ancient biogeography in a radiation of short-range endemic harvestmen from California

Emata KN, Hedin M

Date Published: May 18, 2016

DOI: http://dx.doi.org/10.5061/dryad.70h1h.2

 

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Title Calicina Raw Morphological Data Matrix
Downloaded 3 times
Description Combined morphological data matrix used for comparative analyses showing unique specimen ID (KEM#), species idenfitication, text locality information, and sex for each specimen measured. Raw measurements of Scute Length (measured dorsally at the midline in mm) and Leg II Length (combined length of individual segments starting with the trochanter in mm) were treated as continuous characters in comparative analyses. Eye development was treated as a binary character (present vs. absent).
Download CalicinaMorphDryad.xlsx (47.41 Kb)
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Title Phased RNA Polymerase II Transcription Factor Alignment
Description Phased RNA Polymerase II Transcription Factor alignment used in the final *BEAST species tree inference. Heterozygous haplotypes were reconstructed using the program PHASE v2.1 (Stephens et al., 2001).This gene region is orthologous to Ixodes protein ISCW004924.
Download B9_B10AlignPhasedF_19April2015.fasta (33.17 Kb)
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Title Phased Uroporphyrinogen Decarboxylase Alignment
Downloaded 1 time
Description Phased Uroporphyrinogen Decarboxylase alignment used in the final *BEAST species tree inference. Heterozygous haplotypes were reconstructed using the program PHASE v2.1 (Stephens et al., 2001).This gene region is orthologous to Ixodes protein ISCW020804.
Download D7_D8AlignPhasedF_19April2015.fasta (43.17 Kb)
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Title Phased Ski-Interacting Protein Alignment
Downloaded 1 time
Description Phased Ski-Interacting Protein alignment used in the final *BEAST species tree inference. Heterozygous haplotypes were reconstructed using the program PHASE v2.1 (Stephens et al., 2001).This gene region is orthologous to Ixodes protein ISCW021146.
Download E1_E2AlignPhasedF_19April2015.fasta (48.52 Kb)
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Title Raw Climatic Data
Downloaded 3 times
Description Raw climatic data for all known published (Ubick and Briggs, 1989) and SDSU Museum of Biodiversity collection localities for Calicina specimens from Bioclimatic layers 1-19 of the WORLDCLIM dataset v.1.4 Data were extracted at 30 arc-second (1 km) resolution (Hijmans et al., 2005) using the program DIVA-GIS (Hijmans et al., 2004).
Download CalicinaClimData.csv (17.93 Kb)
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When using this data, please cite the original publication:

Emata KN, Hedin M (2016) From the mountains to the coast and back again: ancient biogeography in a radiation of short-range endemic harvestmen from California. Molecular Phylogenetics and Evolution 98: 233–243. http://dx.doi.org/10.1016/j.ympev.2016.02.002

Additionally, please cite the Dryad data package:

Emata KN, Hedin M (2016) Data from: From the mountains to the coast and back again: ancient biogeography in a radiation of short-range endemic harvestmen from California. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.70h1h.2
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