Data from: The effects of recombination, mutation and selection on the evolution of the Rp1 resistance genes in grasses

Jouet A, McMullan M, van Oosterhout C

Date Published: April 22, 2015

DOI: http://dx.doi.org/10.5061/dryad.717vp

 

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Title Maximum clade credibility trees using the total alignement with no priors on divergence times.
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Description Maximum clade credibility trees using the total alignment with no priors on divergence times. Trees were inferred using BEAST v1.62. Estimated ages of divergence are depicted in bold and posterior probabilities in italic. Abbreviations, Sb: Sorghum bicolor, Ta1 and Ta2: Triticum aestivum, Bd: Brachypodium distachyon.
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Title Maximum clade credibility trees using the truncated alignment with no priors on divergence times.
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Description Maximum clade credibility trees using the truncated alignment with no priors on divergence times. Trees were inferred using BEAST v1.62. Estimated ages of divergence are depicted in bold and posterior probabilities in italic. Abbreviations, Sb: Sorghum bicolor, Ta1 and Ta2: Triticum aestivum, Bd: Brachypodium distachyon.
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Title Maximum clade credibility trees using the total alignment as well as fossil calibrations
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Description Maximum clade credibility trees using the total alignment as well as fossil calibrations. Trees were inferred using BEAST v1.62. Estimated ages of divergence are depicted in bold and posterior probabilities in italic. Abbreviations, Sb: Sorghum bicolor, Ta1 and Ta2: Triticum aestivum, Bd: Brachypodium distachyon.
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Title Maximum clade credibility trees using the truncated alignment as well as fossil calibrations.
Downloaded 5 times
Description Maximum clade credibility trees using the truncated alignment as well as fossil calibrations. Trees were inferred using BEAST v1.62. Estimated ages of divergence are depicted in bold and posterior probabilities in italic. Abbreviations, Sb: Sorghum bicolor, Ta1 and Ta2: Triticum aestivum, Bd: Brachypodium distachyon.
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Title Total alignment of Rp1 sequences from the 5 Poaceae genera used in this study.
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Description This alignment was used to construct phylogenetic trees with and without calibration points and evaluate the incidence of recombination.
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Title Truncated alignment of Rp1 sequences from the 5 Poaceae genera used in this study.
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Description This alignment was used to construct phylogenetic trees with and without calibration points and to test for a correlation between positively-selected amino-acids and the incidence of recombination.
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When using this data, please cite the original publication:

Jouet A, McMullan M, van Oosterhout C (2015) The effects of recombination, mutation and selection on the evolution of the Rp1 resistance genes in grasses. Molecular Ecology 24(12): 3077-3092. http://dx.doi.org/10.1111/mec.13213

Additionally, please cite the Dryad data package:

Jouet A, McMullan M, van Oosterhout C (2015) Data from: The effects of recombination, mutation and selection on the evolution of the Rp1 resistance genes in grasses. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.717vp
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