Data from: The genome of the clonal raider ant Cerapachys biroi

 

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Title Gene details for Cerapachys biroi chemosensory genes, UGTs and CYPs
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Description Tab 1 contains details of all manually annotated chemosensory genes from Cerapachys biroi. Tab 2 contains all sequenced ant UDP glycosyltransferases, organised by clade (as described in supplemental data of Oxley et al.). Tab 3 contains all sequenced ant cytochrome P450 genes, organised by clade (as described in supplemental data of Oxley et al.).
Download UGT CYP and OR gene lists.xlsx (470.6 Kb)
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Title MUSCLE alignment of insect UDP glycosyltransferases
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Description Alignment of UDP glycosyltransferases containing conserved signature motif (Mackenzie et al. Pharmacogenetics (1997) 7,255-269). Sequence includes motif and 100 amino acids up- and downstream. Details can be found in supplemental data: UDP Glycosyltransferases (UGTs) in Oxley et al.
Download UGTs_321.muscle.fasta (133.7 Kb)
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Title NEXUS file of maximum likelihood tree for insect UGTs
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Description Maximum likelihood tree was constructed using Garli 2.0 (Poisson+G+I evolutionary model; best tree of five runs chosen), using the alignments provided in this repository.
Download UGTs_321.tre (71.36 Kb)
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Title MUSCLE alignment of insect cytochrome P450 genes
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Description MUSCLE alignment of all sequenced ant CYPs and representative dipteran, hymenopteran and lepidopteran CYPs. All genes were manually checked for presence of conserved motifs (Nelson, D. Methods Mol. Biol. (2006) 320, 1-10). The alignment was further edited to remove the hypervariable non-conserved N-terminal up to (but not including) the N-terminal anchor sequence, as well as the region between the C-helix and I-helix. Further details can be found in Supplemental Data: Cytochrome P450 Genes of Oxley et al.
Download CYPs_573.muscle.fasta (842.9 Kb)
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Title NEXUS file of maximum likelihood tree for insect CYPs
Downloaded 16 times
Description Maximum likelihood phylogeny was constructed using Garli 2.0 (Poisson+G+I evolutionary model; best tree of two runs chosen) using protein alignment provided in this repository. For further details see Supplemental Data: Cytochrome p450 Genes in Oxley et al.
Download CYPs_573.tre (114.7 Kb)
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When using this data, please cite the original publication:

Oxley PR, Ji L, Fetter-Pruneda I, McKenzie SK, Li C, Hu H, Zhang G, Kronauer DJC (2014) The genome of the clonal raider ant Cerapachys biroi. Current Biology 24(4): 451–458. http://dx.doi.org/10.1016/j.cub.2014.01.018

Additionally, please cite the Dryad data package:

Oxley PR, Ji L, Fetter-Pruneda I, McKenzie SK, Li C, Hu H, Zhang G, Kronauer DJC (2014) Data from: The genome of the clonal raider ant Cerapachys biroi. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.71nv1
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