Data from: De novo assembly and characterization of leaf and floral transcriptomes of the hybridizing bromeliad species (Pitcairnia spp.) adapted to Neotropical Inselbergs

Palma-Silva C, Ferro M, Bacci M, Turchetto-Zolet AC

Date Published: December 23, 2015

DOI: http://dx.doi.org/10.5061/dryad.7205r

 

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Title SSR primers designed
Downloaded 35 times
Description Microsatellite loci identifed for Pitcairnia staminea and P. albiflos leaf and floral transcriptomes
Download Table SSR Primers designed.xls (3.683 Mb)
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Title Table S3_List of candidate genes
Downloaded 27 times
Description Annotation of candidate genes of anthocyanin and flavonoid biosynthetic pathway, including FPKM (fragments per kilobase of transcript per million fragments sequenced) for each transcript.
Download Table S3_List of candidate genes.docx (42.76 Kb)
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Title Table S1_The GOs classifcation all leaves
Downloaded 22 times
Description GO classification of the assembled sequences into three main categories (biological function, cellular component and molecular function) at all levels (1–17). Columns list the number of transcripts corresponding to the individual species and tissues separately
Download Table S1_The GOs classifcation all leaves.xlsx (442.3 Kb)
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Title Table S2_Keeg pathways
Downloaded 20 times
Description List of all KEGG pathways with the number of annotated ECs
Download Table S2_Keeg pathways.docx (23.44 Kb)
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Title Phylogeny alignments
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Description Alignments of MYB, HY5, WD40, HD-ZIP genes
Download Phylogeny alignments.rar (11.56 Kb)
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Title Contigs of each transcriptome
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Description Files with assembled contigs of each transcriptome
Download Contigs of each transcriptome.rar (120.6 Mb)
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Title FPKM values for each transcriptome
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Description Excel files containing FPKM values for each contig
Download FPKM values for each transcriptome.rar (3.341 Mb)
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When using this data, please cite the original publication:

Palma-Silva C, Ferro M, Bacci M, Turchetto-Zolet AC (2016) De novo assembly and characterization of leaf and floral transcriptomes of the hybridizing bromeliad species (Pitcairnia spp.) adapted to Neotropical Inselbergs. Molecular Ecology Resources 16(4): 1012-1022. http://dx.doi.org/10.1111/1755-0998.12504

Additionally, please cite the Dryad data package:

Palma-Silva C, Ferro M, Bacci M, Turchetto-Zolet AC (2016) Data from: De novo assembly and characterization of leaf and floral transcriptomes of the hybridizing bromeliad species (Pitcairnia spp.) adapted to Neotropical Inselbergs. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7205r
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