Data from: Phylogeny of haemosporidian blood parasites revealed by a multi-gene approach

Borner J, Pick C, Thiede J, Kolawole OM, Kingsley MT, Schulze J, Cottontail VM, Wellinghausen N, Schmidt-Chanasit J, Bruchhaus I, Burmester T

Date Published: September 17, 2015

DOI: http://dx.doi.org/10.5061/dryad.72fg9

 

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Title Single gene amino acid alignments of the 21 nuclear genes
Downloaded 5 times
Description Fasta files containing the single amino acid nucleotide alignments of the 21 nuclear genes. The alignments were created using MAFFT L-INS-i v7.013.
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Title Single gene amino acid alignments of the 21 nuclear genes Glocks processed
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Description Fasta files containing the single gene amino acid alignments of the 21 nuclear genes after processing by Gblocks 0.91b (allowing for smaller final blocks, gap positions within the final blocks, and less strict flanking positions).
Download single_genes_aa_gblocks.zip (39.51 Kb)
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Title Single gene nucleotide alignments of the 21 nuclear genes
Downloaded 7 times
Description Fasta files containing the single gene nucleotide alignments of the 21 nuclear genes. The nucleotide (codon) alignments are based on the amino acid alignments.
Download single_genes_codons.zip (110.1 Kb)
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Title Single gene nucleotide alignments of the 21 nuclear genes Glocks processed
Downloaded 6 times
Description Fasta files containing the single gene nucleotide alignments of the 21 nuclear genes after processing by Gblocks. The nucleotide (codon) alignments are based on the Gblocks processed amino acid alignments.
Download single_genes_codons_gblocks.zip (94.11 Kb)
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Title Single gene nucleotide alignments of the combined dataset
Downloaded 9 times
Description Fasta files containing the single gene nucleotide alignments comprising data for five genes from the studies of Martinsen et al. (2008), Schaer et al. (2013) and Borner et al. (2015).
Download single_genes_martinsen_schaer_borner_combined.zip (24.18 Kb)
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Title Concatenated multigene aignments
Downloaded 11 times
Description Fasta files containing the concatenated multigene aignments of the datasets listed in Supplemental Table S4.
Download super_alignments.zip (477.5 Kb)
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Title readme
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When using this data, please cite the original publication:

Borner J, Pick C, Thiede J, Kolawole OM, Kingsley MT, Schulze J, Cottontail VM, Wellinghausen N, Schmidt-Chanasit J, Bruchhaus I, Burmester T (2015) Phylogeny of haemosporidian blood parasites revealed by a multi-gene approach. Molecular Phylogenetics and Evolution 94A: 221-231. http://dx.doi.org/10.1016/j.ympev.2015.09.003

Additionally, please cite the Dryad data package:

Borner J, Pick C, Thiede J, Kolawole OM, Kingsley MT, Schulze J, Cottontail VM, Wellinghausen N, Schmidt-Chanasit J, Bruchhaus I, Burmester T (2015) Data from: Phylogeny of haemosporidian blood parasites revealed by a multi-gene approach. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.72fg9
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