Data from: Candidate genes mediating magnetoreception in rainbow trout (Oncorhynchus mykiss)

Fitak RR, Wheeler BR, Ernst DA, Lohmann KJ, Johnsen S

Date Published: March 30, 2017

DOI: http://dx.doi.org/10.5061/dryad.73b86

 

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Title Expression Data from CUFFLINKS
Downloaded 4 times
Description This spreadsheet contains the normalized expression level (FPKM) in each of the 10 sequenced libraries, in addition to the expression for each treatment (control vs pulsed) and the expression ratio (log2_fold_change). The “Description” for each protein includes all annotated GO terms for that protein from BLAST2GO. All protein IDs are from the Trout Genome Browser – www.genoscope.cns.fr/trout
Download All_expression-data.csv (20.56 Mb)
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Title C4 Alignment (BAM) file
Downloaded 2 times
Description This is the alignment (BAM) file for control group sample C4 created by mapping the trimmed reads using STAR v2.5.0. Md5 tag = d194fb49262e369e0d143ce0e4cfd0cc
Download C4.mapping-Aligned.sortedByCoord.out.bam (2.157 Gb)
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Title C9 Alignment (BAM) file
Downloaded 1 time
Description This is the alignment (BAM) file for control group sample C9 created by mapping the trimmed reads using STAR v2.5.0. Md5 tag = 2fc8f6ee81649a6a772f82c720e7a9db
Download C9.mapping-Aligned.sortedByCoord.out.bam (1.738 Gb)
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Title C10 Alignment (BAM) file
Downloaded 1 time
Description This is the alignment (BAM) file for control group sample C10 created by mapping the trimmed reads using STAR v2.5.0. Md5 tag = 7701d1f77208e03c4fd850d8f22c0775
Download C10.mapping-Aligned.sortedByCoord.out.bam (1.848 Gb)
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Title C11 Alignment (BAM) file
Downloaded 1 time
Description This is the alignment (BAM) file for control group sample C11 created by mapping the trimmed reads using STAR v2.5.0. Md5 tag = b5c3d65db71162aa1b9d7646fa2823a9
Download C11.mapping-Aligned.sortedByCoord.out.bam (1.848 Gb)
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Title C12 Alignment (BAM) file
Downloaded 1 time
Description This is the alignment (BAM) file for control group sample C12 created by mapping the trimmed reads using STAR v2.5.0. Md5 tag = 5e700bf725e2f12fade6fc8e925ab676
Download C12.mapping-Aligned.sortedByCoord.out.bam (1.787 Gb)
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Title P7 Alignment (BAM) file
Description This is the alignment (BAM) file for pulsed group sample P7 created by mapping the trimmed reads using STAR v2.5.0. Md5 tag = 6336249f9067b0ddc65d0f9a144ff7be
Download P7.mapping-Aligned.sortedByCoord.out.bam (2.081 Gb)
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Title P13 Alignment (BAM) file
Description This is the alignment (BAM) file for pulsed group sample P13 created by mapping the trimmed reads using STAR v2.5.0. Md5 tag = 2e1d24aad1707dc3df1e1b43e51e53c2
Download P13.mapping-Aligned.sortedByCoord.out.bam (1.668 Gb)
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Title P14 Alignment (BAM) file
Downloaded 1 time
Description This is the alignment (BAM) file for pulsed group sample P14 created by mapping the trimmed reads using STAR v2.5.0. Md5 tag = 7eeb1f4452727cf41422cacc3e9f317c
Download P14.mapping-Aligned.sortedByCoord.out.bam (1.892 Gb)
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Title P15 Alignment (BAM) file
Downloaded 1 time
Description This is the alignment (BAM) file for pulsed group sample P15 created by mapping the trimmed reads using STAR v2.5.0. Md5 tag = c17e282388161b6e7e48305ec8ae421f
Download P15.mapping-Aligned.sortedByCoord.out.bam (1.849 Gb)
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Title P16 Alignment (BAM) file
Downloaded 1 time
Description This is the alignment (BAM) file for pulsed group sample P16 created by mapping the trimmed reads using STAR v2.5.0. Md5 tag = 7be88352777672f3f755e2511b267fbf
Download P16.mapping-Aligned.sortedByCoord.out.bam (1.776 Gb)
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Title O. mykiss Blast2GO database
Downloaded 15 times
Description This file contains the complete de novo annotation of all protein-coding genes in the trout genome using Blast2GO. This file can only be opened using Blast2GO, and the user must request a license (free) from the supplier.
Download Omykiss.b2g (164.7 Mb)
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Title O. mykiss GO annotation
Downloaded 3 times
Description The file is a table summarizing the Blast2GO output. See README.txt for more information.
Download O_mykiss.blast2go.annot.csv (5.132 Mb)
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Title README file
Downloaded 5 times
Description A description of the contents of this data archive.
Download README.txt (9.744 Kb)
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When using this data, please cite the original publication:

Fitak RR, Wheeler BR, Ernst DA, Lohmann KJ, Johnsen S (2017)Candidate genes mediating magnetoreception in rainbow trout (Oncorhynchus mykiss). Biology Letters 13(4): 20170142. http://dx.doi.org/10.1098/rsbl.2017.0142

Additionally, please cite the Dryad data package:

Fitak RR, Wheeler BR, Ernst DA, Lohmann KJ, Johnsen S (2017) Data from: Candidate genes mediating magnetoreception in rainbow trout (Oncorhynchus mykiss). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.73b86
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