Data from: Characterizing the reproductive transcriptomic correlates of acute dehydration in males in the desert-adapted rodent, Peromyscus eremicus

Kordonowy L, MacManes M

Date Published: June 23, 2017

DOI: http://dx.doi.org/10.5061/dryad.743p5

 

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Title DTEno-matchBLASTnSequences
Downloaded 6 times
Description This markdown file includes the BLASTnSequencing results for the DTE analysis (the sequences without matches)
Download DTEno-matchBLASTnSequences.md (25.22 Kb)
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Title NEWESTFinalMUS
Downloaded 5 times
Description Gene ID by Transcript ID matrix
Download NEWESTFinalMUS.txt (1.477 Mb)
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Title NEWmergedcounts
Downloaded 7 times
Description Salmon merged quant file
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Title good.BINPACKER.cdhit.fasta.dammit.gff3
Downloaded 4 times
Description Dammit gff3 file of annotation Dammit gff3 file of annotation
Download good.BINPACKER.cdhit.fasta.dammit.gff3 (123.8 Mb)
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Title good.BINPACKER.cdhit.fasta.dammit.fasta
Downloaded 3 times
Description Annotated transcriptome
Download good.BINPACKER.cdhit.fasta.dammit.fasta (173.0 Mb)
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Title good.BINPACKER.cdhit.fasta
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Description Optimized final un-annotated transcriptome
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Title highENSM.csv
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Description Accession ID file for PANTHER: relatively high DRY expression gene list
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Title highENSMgoLIST.txt
Downloaded 2 times
Description PANTHER GO List results for relatively high DRY expression gene list
Download highENSMgoLIST.txt (658.7 Kb)
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Title lowENSM.csv
Downloaded 3 times
Description Accession ID file for PANTHER: relatively high WET expression gene list
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Title lowENSMgoLIST.txt
Downloaded 5 times
Description PANTHER GO List Results for relatively high WET expression gene list
Download lowENSMgoLIST.txt (271.7 Kb)
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Title salmon files
Downloaded 1 time
Description Salmon folder including salmon quant outputs for 22 individuals (salmon)
Download salmon.zip (45.08 Mb)
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Title testesDGE-master 2
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Description Markdown files for analyses from GitHub site: https://github.com/macmanes-lab/testesDGE
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When using this data, please cite the original publication:

Kordonowy L, MacManes M (2017) Characterizing the reproductive transcriptomic correlates of acute dehydration in males in the desert-adapted rodent, Peromyscus eremicus. BMC Genomics 18(1): 473. http://dx.doi.org/10.1186/s12864-017-3840-1

Additionally, please cite the Dryad data package:

Kordonowy L, MacManes M (2017) Data from: Characterizing the reproductive transcriptomic correlates of acute dehydration in males in the desert-adapted rodent, Peromyscus eremicus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.743p5
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