Data from: Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster

Bergland AO, Tobler R, Gonzalez J, Schmidt P, Petrov DA

Date Published: November 4, 2015

DOI: http://dx.doi.org/10.5061/dryad.7440s

 

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Title ms code for admixture simulation
Downloaded 26 times
Description bash script to evaluate accuracy of ancestry estimation from allele frequency data.
Download admixture_ms.sh (20.67 Kb)
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Title Population trees for all sampled D. mel populations in Newick format
Downloaded 12 times
Description Trees are partitioned based on chromosome and inversion status.
Download SupplementalDoc1.resub.txt (19.38 Kb)
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Title Distance matrices for population trees
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Description Nei's genetic distance matrices for populations used in this study. A separate file for each chromosome & inversion type is provided.
Download daMats.tar.gz (135.0 Kb)
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Title Allele frequencies for world-wide D. melanogaster populations
Downloaded 24 times
Description Allele frequency information for ~500,000 SNPs genome-wide from D. melanogaster populations sampled throughout the world. See Readme for detailed information
Download popFqs.delim.gz (28.54 Mb)
Download README.txt (1.293 Kb)
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When using this data, please cite the original publication:

Bergland AO, Tobler R, Gonzalez J, Schmidt P, Petrov DA (2016) Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster. Molecular Ecology 25(5): 1157–1174. http://dx.doi.org/10.1111/mec.13455

Additionally, please cite the Dryad data package:

Bergland AO, Tobler R, Gonzalez J, Schmidt P, Petrov DA (2015) Data from: Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7440s
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