Data from: A Bayesian supertree model for genome-wide species tree reconstruction

de Oliveira Martins L, Mallo D, Posada D

Date Published: October 10, 2014

DOI: http://dx.doi.org/10.5061/dryad.74922

 

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Title Simulation Scripts
Downloaded 11 times
Description Contains the python scripts used to simulate the replicate data sets, as well as the R scripts for recreating the manuscript and supplementary figures. This file was compressed with tar using the XZ format, that is, must be uncompressed with e.g. "tar Jxvf filename.txz" When uncompressed it will contain a README file with more information.
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Title Drosophila gene trees
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Description Data downloaded from TreeFam (http://www.treefam.org/) and processed to represent all drosophila gene families, as well as the input gene tree distributions created from them. This file was compressed with tar using the XZ format, that is, must be uncompressed with e.g. "tar Jxvf filename.txz" When uncompressed it will contain a README file with more information.
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Title Supplementary Figures
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Description Supplementary Figures mentioned in the text as SF1 to SF6, merged into one PDF file.
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Title guenomu software from 2013.08
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Description This file contains a link to the version of the Bayesian supertree inference software 'guenomu' used in the manuscript. The software is openly available at https://bitbucket.org/leomrtns/guenomu This file was compressed with tar using the XZ format, that is, must be uncompressed with e.g. "tar Jxvf filename.txz" When uncompressed it will contain a README file with more information.
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Title simphy software from 2013.08
Downloaded 1 time
Description This file contains a link to the version of the simulation software 'SimPhy' (called "STIDSim" at the time) used in the manuscript. The software is openly available at https://code.google.com/p/simphy-project/ This file was compressed with tar using the XZ format, that is, must be uncompressed with e.g. "tar Jxvf filename.txz" When uncompressed it will contain a README file with more information.
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When using this data, please cite the original publication:

de Oliveira Martins L, Mallo D, Posada D (2014) A Bayesian supertree model for genome-wide species tree reconstruction. Systematic Biology 65(3): 397-416. http://dx.doi.org/10.1093/sysbio/syu082

Additionally, please cite the Dryad data package:

de Oliveira Martins L, Mallo D, Posada D (2014) Data from: A Bayesian supertree model for genome-wide species tree reconstruction. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.74922
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