Data from: Mass production of SNP markers in a nonmodel passerine bird through RAD sequencing and contig mapping to the zebra finch genome

 

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Title SNPs validated with different MAC (2 or 3) and a sequencing depth of 10 or 20X
Downloaded 42 times
Description This archive contains three types of files with extensions '.n', '.y' and '.alleles'. '.n' files list for each library the number of reads associated at each SNP position. '.y' files list the number of times a SNP is detected. '.alleles' files give the name of the contig displaying a given SNP, then the position of the SNP from the restriction site, the total number of reads for the whole dataset, the count of the minor allele, the count of the major allele, and the two possible nucleotides encountered at this position
Download Files_with_contigs_names_and_allele_count...ia.zip (23.34 Mb)
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Title Fasta file listing contigs
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Download consensus_reads_1_2_UDBA.zip (77.07 Mb)
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When using this data, please cite the original publication:

Bourgeois YXC, Lhuillier E, Cézard T, Bertrand JAM, Delahaie B, Cornuault J, Duval T, Bouchez O, Milá B, Thébaud C (2013) Mass production of SNP markers in a nonmodel passerine bird through RAD sequencing and contig mapping to the zebra finch genome. Molecular Ecology Resources 13(5): 899–907. http://dx.doi.org/10.1111/1755-0998.12137

Additionally, please cite the Dryad data package:

Bourgeois YXC, Lhuillier E, Cézard T, Bertrand JAM, Delahaie B, Cornuault J, Duval T, Bouchez O, Milá B, Thébaud C (2013) Data from: Mass production of SNP markers in a nonmodel passerine bird through RAD sequencing and contig mapping to the zebra finch genome. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.755b5
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