Data from: Controlling false discoveries in genome scans for selection

Francois O, Martins H, Caye K, Schoville S

Date Published: December 9, 2015

DOI: http://dx.doi.org/10.5061/dryad.78642

 

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Title Example 1 genotypes
Downloaded 18 times
Description A matrix of genotypes for 200 diploid individuals genotyped at 1000 loci. These data are used in the first tutorial example of our review paper. They are also required when reproducing the results reported in the supplementary file 1.
Download ex1geno.lfmm (400.2 Kb)
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Title FDIST values for example 1
Downloaded 13 times
Description Significance values computed from the program FDIST for the genotypic data presented in example 1. These p-values were obtained by setting Fst at a level of 5 percent and by using 20,000 simulation replicates.
Download FDISTpv.dat (37.32 Kb)
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Title Genotypes for 170 European lines of A. thaliana (Chromosome 1)
Downloaded 14 times
Description Genotypes for European lines of A. thaliana (Chromosome 1) genotyped at a density of one SNP per kb. These data are used in our tutorial example 2 and supplementary file 2. Data extracted from Atwell et al. 2010 (publicly availlable dataset).
Download chr1geno.lfmm (8.904 Mb)
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Title Environmental variable for 170 European lines of A. thaliana
Downloaded 9 times
Description Environmental data for 170 European lines of A. thaliana summarized from 18 bioclimatic variables. These data are used in our tutorial example 2 and supplementary file 2.
Download chr1var.env (3.032 Kb)
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Title Genetic map for A. thaliana chromosome 1
Downloaded 13 times
Description Genetic map for A. thaliana chromosome 1. Markers were genotyped at a density on one SNP per kb. These data are used in out tutorial example 2 and in the supplementary file 2.
Download poschr1.txt (226.1 Kb)
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When using this data, please cite the original publication:

Francois O, Martins H, Caye K, Schoville S (2016) Controlling false discoveries in genome scans for selection. Molecular Ecology 25(2): 454–469. http://dx.doi.org/10.1111/mec.13513

Additionally, please cite the Dryad data package:

Francois O, Martins H, Caye K, Schoville S (2015) Data from: Controlling false discoveries in genome scans for selection. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.78642
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