Data from: Estimating synchronous demographic changes across populations using hABC, and its application for a herpetological community from Northeastern Brazil

Gehara M, Garda AA, Werneck FP, Oliveira EF, da Fonseca EM, Camurugi F, de Magalhães FM, Lanna FM, Sites JW, Marques R, Silveira-Filho R, São-Pedro VA, Colli GR, Costa GC, Burbrink FT

Date Published: July 19, 2017

DOI: http://dx.doi.org/10.5061/dryad.789pv

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Ameivula ocellifera Ribossomal 12S DNA
Downloaded 3 times
Description Complete 12S alignment of Ameivula ocellifera before bGMYC analysis. This data was first published by Oliveira et al. (2015), Mol Ecol 24, 5957–5975. Information on the 2 lineages used in this study can be found in the Excel file bellow. The complete information of GPS coordinates, locality and GenBank accession numbers for the entire alignment can be found in Table S1 of Oliveira et al. (2015).
Download A_ocellifera_12S.fas (42.05 Kb)
Details View File Details
Title Dermatonotus muelleri NADH dehydrogenase 2
Downloaded 3 times
Description Complete ND2 alignment of Dermatonotus muelleri before bGMYC analysis. Information on the 2 lineages used in this study can be found in the Excel file bellow.
Download D_muelleri_ND2.fas (38.86 Kb)
Details View File Details
Title Lygodactylus klugei NADH dehydrogenase 4
Downloaded 6 times
Description Complete ND4 alignment of Lygodactylus klugei before bGMYC analysis. Information on the lineage used in this study can be found in the Excel file bellow.
Download L_klugei_ND4.fas (37.74 Kb)
Details View File Details
Title Micrablepharus maximiliani concatenated mtDNA
Downloaded 4 times
Description Complete concatenated cyb+ND4 alignment of Micrablepharus maximiliani before bGMYC analysis. Information on the lineage used in this study can be found in the Excel file bellow.
Download M_maximiliani_concat.fas (232.7 Kb)
Details View File Details
Title Polychrus acutirostris Cytochrome-b
Downloaded 6 times
Description Complete Cyb alignment of Polychrus acutirostris before bGMYC analysis. Information on the lineages used in this study can be found in the Excel file bellow.
Download P_acutirostris_Cytb.fas (15.33 Kb)
Details View File Details
Title Pleurodema diplolister Cytochrome oxydase 1
Downloaded 5 times
Description Complete COI alignment of Pleurodema diplolister before bGMYC analysis. Data first published by Thomé et al 2016, Jbiogeo, 43, 5, 1045–1056. Information on the lineage used in this study can be found in the Excel file. Complete information for the alignment can be found in Thomé et al 2016.
Download P_diplolister.fas (114.8 Kb)
Details View File Details
Title Philodryas nattereri Cytochrome oxydase 1
Downloaded 6 times
Description Complete COI alignment of Philodryas nattereri before bGMYC analysis. Information on the lineage used in this study can be found in the Excel file bellow.
Download P_nattereri_COI.fasta (49.61 Kb)
Details View File Details
Title Phyllomedusa nordestina Cytochrome-b
Downloaded 3 times
Description Complete Cyb alignment of Phyllomedusa nordestina before bGMYC analysis. Information on the lineage used in this study can be found in the Excel file bellow.
Download P_nordestina_cytb.fas (51.59 Kb)
Details View File Details
Title Phyllopezus pollicaris Cytochrome-b
Downloaded 4 times
Description Complete Cyb alignment of Phyllopezus pollicaris before bGMYC analysis. Data first published by Werneck et al 2012, Evolution, 66, 3014–3034. Information on the lineages used in this study can be found in the Excel file.
Download P_policaris_ctyb.fas (151.5 Kb)
Details View File Details
Title Rhinella jimi Ribossomal 16S DNA
Downloaded 4 times
Description Cyb alignment of Rhinella jimi before bGMYC analysis. Information on the lineage used in this study can be found in the Excel file.
Download R_jimi_16S.fas (17.31 Kb)
Details View File Details
Title Vanzosaura multiscutata Cytochrome-b
Downloaded 3 times
Description Complete Cyb alignment of Vanzosaura multiscutata before bGMYC analysis. Data first published by Recoder et al 2015, Zool J Linn Soc, 171, 206-225. Information on the lineage used in this study can be found in the Excel file.
Download V_multiscutata_cytb.fas (102.1 Kb)
Details View File Details
Title Excel sheet
Downloaded 5 times
Description This Excel file contains information only for the populations used in the study. The sheet contains locality, GPS, voucher and genbank accession numbers. Some sequences were not deposited in Genbank up to June of 2017.
Download all_data.xlsx (69.59 Kb)
Details View File Details

When using this data, please cite the original publication:

Gehara M, Garda AA, Werneck FP, Oliveira EF, da Fonseca EM, Camurugi F, de Magalhães FM, Lanna FM, Sites JW, Marques R, Silveira-Filho R, São Pedro VA, Colli GR, Costa GC, Burbrink FT (2017) Estimating synchronous demographic changes across populations using hABC, and its application for a herpetological community from Northeastern Brazil. Molecular Ecology, online in advance of print. http://dx.doi.org/10.1111/mec.14239

Additionally, please cite the Dryad data package:

Gehara M, Garda AA, Werneck FP, Oliveira EF, da Fonseca EM, Camurugi F, de Magalhães FM, Lanna FM, Sites JW, Marques R, Silveira-Filho R, São-Pedro VA, Colli GR, Costa GC, Burbrink FT (2017) Data from: Estimating synchronous demographic changes across populations using hABC, and its application for a herpetological community from Northeastern Brazil. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.789pv
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: