Data from: Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family

Malé PG, Bardon L, Besnard G, Coissac E, Delsuc F, Engel J, Lhuillier E, Scotti-Saintagne C, Tinaut A, Chave J

Date Published: March 4, 2014

DOI: http://dx.doi.org/10.5061/dryad.78p90

 

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Title script_chloro
Downloaded 41 times
Description UNIX script used for plastid reconstruction. The following tools must be installed: VELVET, PLAST, COPE, OBITOOLS
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Title alignments
Downloaded 58 times
Description Plastid DNA, mitochondrial DNA and nuclear ribosomic regions alignments, including the complete sequences or the non-intronic transcribed sequences only. Alignments were performed using MAFFT and cleaned using Gblocks. Files are in fasta format.
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Title trees
Downloaded 44 times
Description Trees obtained with plastid DNA, mitochondrial DNA and nuclear ribosomic regions alignments, including the complete sequences or the non-intronic transcribed sequences only, using RAxML and MrBayes. Files are in NEXUS format.
Download chrysobalanaceae_phylogenomic_trees(1).rar (12.88 Kb)
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When using this data, please cite the original publication:

Malé PG, Bardon L, Besnard G, Coissac E, Delsuc F, Engel J, Lhuillier E, Scotti-Saintagne C, Tinaut A, Chave J (2014) Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family. Molecular Ecology Resources 14(5): 966-975. http://dx.doi.org/10.1111/1755-0998.12246

Additionally, please cite the Dryad data package:

Malé PG, Bardon L, Besnard G, Coissac E, Delsuc F, Engel J, Lhuillier E, Scotti-Saintagne C, Tinaut A, Chave J (2014) Data from: Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.78p90
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